@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VL26: (2017-10-30 )
MFVAGVDEAGRGPLVGSVVAAAVILDPNNPILGLNDSKKLTEKKREKLFIEIQEKALAWSIAEATHAEIDELNILQATFLAMQRAVDGLKTQPQKVIVDGNQIPKGIVIPCEAIVGGDASHAEISAASILAKVTRDRQMAELDQQYPLFGFAKHKGYPTKAHFEAIAAHGVIDQHRRSYAPVKRALGL

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

EDO_A_7(2ETJ)
RNH2_THEMA
[Raw transfer]




EDO_A_5(2ETJ)
RNH2_THEMA
[Raw transfer]




NACID_C_2(3O3G)
RNH2_THEMA
[Raw transfer]

-

NACID_C_2(3O3F)
RNH2_THEMA
[Raw transfer]

-

NACID_D_3(4HHT)
RNH2_THEMA
[Raw transfer]

-

NACID_D_3(4HHT)
RNH2_THEMA
[Raw transfer]

-

NACID_D_3(3O3H)
RNH2_THEMA
[Raw transfer]

-

NACID_D_3(3O3F)
RNH2_THEMA
[Raw transfer]

-

35 HHSearch 78.6251%-102 - C1 -3O3F 5.0 RNH2_THEMA
3 PsiBlast_PDB 78.0051%-101 - C1 -3O3H 4.5 RNH2_THEMA
36 HHSearch 77.0752%-106 - C1 -2ETJ - RNH2_THEMA -
1 PsiBlast_PDB 76.7352% -94 - C1 -3O3G 6.1 RNH2_THEMA
2 PsiBlast_PDB 76.1551%-104 - C1 -3O3F 5.1 RNH2_THEMA
25 Fugue 75.5548% -8 - C1 -4HHT 6.3 RNH2_THEMA
4 PsiBlast_PDB 73.5451%-119 - C1 -4HHT 6.3 RNH2_THEMA
5 PsiBlast_PDB 73.2851%-109 - C1 -2ETJ 2.9 RNH2_THEMA
15 PsiBlast_PDB 68.6130% - - C1 -3P5J - RNH2A_MOUSE -
12 PsiBlast_PDB 65.2528% - - C1 -3P83 - RNH2_ARCFU -
9 PsiBlast_PDB 63.6836% 25 - C1 -2DFF - RNH2_THEKO -
26 Fugue 63.3333% 3 - C1 -1IO2 - RNH2_THEKO -
42 HHSearch 63.1627% 0 - C- -3PUF - RNH2A_HUMAN -
7 PsiBlast_PDB 62.8536% 29 - C1 -2DFE - RNH2_THEKO -
39 HHSearch 62.7337% 41 - C1 -1UAX - RNH2_PYRHO -
6 PsiBlast_PDB 62.6738% 13 - C1 -1UAX - RNH2_PYRHO -
10 PsiBlast_PDB 62.6236% 30 - C1 -2DFH - RNH2_THEKO -
38 HHSearch 61.4936% 43 - C1 -2DFH - RNH2_THEKO -
8 PsiBlast_PDB 61.4437% 30 - C1 -1IO2 - RNH2_THEKO -
40 HHSearch 61.2235% 36 - C1 -1X1P - RNH2_THEKO -