@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VL28: (2017-10-31 )
MALIVQKYGGTSMGTPERILNVARRVKRWHDHGHKVVVVVSAMSGETNRLLALAKAITETPDPREIDQMVSTGEQVTISMLAMALNSIGVEAKSYTGRQVGIKTDSAFTKARIESIDTDVMTNDLDAGRVIVVAGFQGFDANGNTTTLGRGGSDTSGVAIAAALKADECQIYTDVDGVYTTDPRVAPKAKKIDRISFEEMLEMASLGSKVLQIRSVEFAGKYQVPLRVLSSFDNDDDGAFDDEFKENVGTLITTEAEDTMEQPIIAGIAFNRDEAKLTILGVPDEPGIASKILSPVSDANIEVDMIVQNVEEDGTTDFTFTVNRVDLAKAEKILNETAKNIGAREVSTRDDIVKVSIVGVGMRSHAGVASKMFTALADEGINILMISTSEIKVSVIIDEKYLELAVRCLHTAFGLDREHGESSARA

Atome Classification :

(22 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ASP_B_3(3C20)
AK_METJA
[Raw transfer]




ASP_A_4(3C20)
AK_METJA
[Raw transfer]




ADP_A_4(2J0W)
AK3_ECOLI
[Raw transfer]




LYS_B_8(2CDQ)
AK1_ARATH
[Raw transfer]




LYS_C_11(3AAW)
AK_CORGL
[Raw transfer]




LYS_C_11(3AAW)
AK_CORGL
[Raw transfer]




ADP_A_4(2J0W)
AK3_ECOLI
[Raw transfer]




LYS_A_6(3L76)
?
[Raw transfer]




81 HHSearch 83.6349% -76 - C2 -3AAW 3.6 AK_CORGL
2 PsiBlast_PDB 81.5444% -88 - C2 -3L76 - ? -
21 PsiBlast_CBE 80.9547% -66 - C2 -3AB2 - AK_CORGL -
22 PsiBlast_CBE 80.4247% -71 - C2 -3AB2 - AK_CORGL -
29 PsiBlast_CBE 80.1447% -81 - C2 -3AB4 - ? -
83 HHSearch 80.0546% -69 - C2 -3L76 2.3 ?
30 PsiBlast_CBE 79.9747% -79 - C2 -3AB4 - ? -
23 PsiBlast_CBE 79.6347% -39 - C2 -3AAW 3.6 AK_CORGL
24 PsiBlast_CBE 79.1347% -85 - C2 -3AB4 - ? -
1 PsiBlast_PDB 77.4547% -45 - C2 -3AAW - AK_CORGL -
28 PsiBlast_CBE 77.0447% -75 - C2 -3AB4 - ? -
80 HHSearch 74.8938% 4 - C2 -3C1M - AK_METJA -
82 HHSearch 74.2438% 1 - C2 -2HMF - AK_METJA -
67 Fugue 72.7037% 3 - C2 -3C1M - AK_METJA -
36 PsiBlast_CBE 70.6332% -11 - C2 -3C1N - AK_METJA -
37 PsiBlast_CBE 70.2032% 2 - C2 -3C1M - AK_METJA -
39 PsiBlast_CBE 70.1832% -1 - C2 -3C1M - AK_METJA -
6 PsiBlast_PDB 69.8832% -0 - C2 -3C1M - AK_METJA -
34 PsiBlast_CBE 69.3632% -3 - C2 -3C20 3.1 AK_METJA
31 PsiBlast_CBE 69.3432% 3 - C2 -2HMF - AK_METJA -
5 PsiBlast_PDB 69.2232% 1 - C2 -3C20 3.6 AK_METJA
79 HHSearch 63.8430% -8 - C2 -2J0W 6.6 AK3_ECOLI