@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VLH0: (2017-11-02 )
MNTSLRLNHYWITCADGLETLLQEEIEQLGTKVTERKAGRLIIEGTLEHAYRICMWSRLASRVLLPIHTYELERTHDARDVAEELYEGAISFDWSLIFAPQSTFAIRLHAEREIKVNTQFATLRVKDGVVDSFMEAVGRRPSIDTKQPEITLYVLAGKTEHTYCLDLSGDSLHKRGYRRFMTDAPIKENLAAAILQKAKLQERNPEIVLDPMCGSGTFIIEALMILTDRAPGLVRRFGFNGWHGHDRELWLSLKAEAAERHEKALEQPLPKFYAYDADWEAVKATRENIIAAGFEKLLGDIQIEERTLADWPDFGAENKTAFIVTNPPYGERLGDKASNRSLYLGLSALLQKNFPNQYAAIIAAQIEQADVLAFEAPETLRLMNGKLPIYVRFGTVKLEKVTQPFLANWQAQPVEMEEAQDFANRLQKNMTALKKWATKENIYCLRLYDADLPDFNLAVDLYSDRLHVQEYAPPKKIDPEKAKKRFNLALAAIRAVTGLNRDAIFIKTRARQTGTNQYTKQSTANKRFIVQEGKAKILVNLTDYLDTGLFLDHRQMRLRIAQEARGKHFLNLYSYTSTASLHAALGGAASTTSVDLSNTYLSWSKENFVLNGLTVDHADEQHMFFASDCFEWLKEGHEQYDLIFIDPPTFSNSKKFHGTFDVQRDHVSLIKRAMNRLTSEGTLYFSNNYRGFEMDEEIEALYDVEEITSETIGPDFKRNQKIHRAWKIQHPGLN

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GTP_A_2(3LDU)
?
[Raw transfer]



SAH_A_2(3LDG)
?
[Raw transfer]
36 HHSearch 86.5743% -33 - C1 -3V97 - RLMKL_ECOLI -
27 Fugue 85.9442% -31 - C1 -3V97 - RLMKL_ECOLI -
35 HHSearch 84.4943% -36 - C1 -3V97 - RLMKL_ECOLI -
1 PsiBlast_PDB 82.9141% -23 - C1 -3V97 - RLMKL_ECOLI -
22 PsiBlast_CBE 81.2741% -30 * C1 *3V97 - RLMKL_ECOLI -
21 PsiBlast_CBE 80.1841% -30 - C1 -3V8V - RLMKL_ECOLI -
37 HHSearch 63.9427%-111 - C1 -3K0B - ? -
38 HHSearch 53.2329% -27 - C1 -3LDU - ? -
39 HHSearch 51.9027% -24 - C1 -3LDG - ? -
2 PsiBlast_PDB 50.2731% -28 - C1 -3LDU 6.3 ?
30 Fugue 48.3624% -33 - C1 -3LDF - ? -
31 Fugue 44.1922% 7 - C1 -3TM4 - ? -
28 Fugue 44.1727% -14 - C1 -3VSE - ? -
3 PsiBlast_PDB 42.3629% -14 - C1 -3LDG 7.4 ?
47 HHSearch 42.3522% -10 - C1 -3TM4 - ? -
48 HHSearch 40.9122% -1 - C1 -3TM5 - ? -
40 HHSearch 40.8722% -1 - C1 -3C0K - RLMI_ECOLI -
13 PsiBlast_PDB 40.4523% -67 - C1 -3TMA - ? -
33 Fugue 39.0322% -22 - C1 -2B78 - ? -
44 HHSearch 38.9630% -3 - C1 -3VSE - ? -