@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VLP9: (2017-11-03 )
MSLFDDTAVSKQLAQVRIVMVNTTLPANIGSALRAMKTMGLSKLVLVSPKTYPHPDIQALAAGAQDLLEQVEIVETLEEAIKDCHLVFGTSARSRTIPWPLLDVRPASKEAIKAAAQGQQIAIVFGREDRGLTNEELALANYHLTIPVNSDYGVLNVAQAIQVVCYELRMSVLEQKEVASDAGQMPLAQGQSMQWDEPLVTQQQMEEFYPHLEKVLTEIEFLDPENPRLLPLRLRRLFGRIQLDRMEYHLLRGIFSRVQALTSGKWKKASSDKEDQSNA

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

SFG_B_6(5GM8)
?
[Raw transfer]




SFG_B_6(5GM8)
?
[Raw transfer]




SFG_A_5(5GM8)
?
[Raw transfer]




SAH_A_3(4XBO)
TRMJ_ECOLI
[Raw transfer]




SAH_A_3(4XBO)
TRMJ_ECOLI
[Raw transfer]




SAH_A_3(4CNE)
TRMJ_ECOLI
[Raw transfer]




SFG_D_8(5GM8)
?
[Raw transfer]




SFG_C_7(5GM8)
?
[Raw transfer]




SAH_B_4(4CNE)
TRMJ_ECOLI
[Raw transfer]




SAH_B_4(4XBO)
TRMJ_ECOLI
[Raw transfer]




MTA_A_5(4CNF)
?
[Raw transfer]




ACY_A_2(3ONP)
?
[Raw transfer]




41 HHSearch 98.3144%-163 - C3 -4XBO 7.3 TRMJ_ECOLI
3 PsiBlast_PDB 96.2542%-148 - C3 -4XBO 7.3 TRMJ_ECOLI
23 PsiBlast_CBE 95.1042%-135 - C3 -4XBO 6.6 TRMJ_ECOLI
26 PsiBlast_CBE 86.7051%-169 - C3 -5GM8 7.2 ?
4 PsiBlast_PDB 86.6951%-161 - C3 -5GMB - ? -
5 PsiBlast_PDB 86.5851%-162 - C3 -5GM8 6.9 ?
6 PsiBlast_PDB 86.2451%-162 - C3 -5GMC - ? -
24 PsiBlast_CBE 86.2351%-165 - C3 -5GM8 6.9 ?
25 PsiBlast_CBE 85.1151%-169 - C3 -5GM8 7.0 ?
38 HHSearch 84.1632% -45 - C3 -5GRA - ? -
37 HHSearch 82.9332% -37 - C3 -5GRA - ? -
2 PsiBlast_PDB 82.6742%-166 - C3 -4CNE 6.4 TRMJ_ECOLI
1 PsiBlast_PDB 82.1242%-165 - C3 -4CND - TRMJ_ECOLI -
9 PsiBlast_PDB 81.5333% -41 - C3 -5GRA - ? -
40 HHSearch 81.3643%-169 - C3 -4CND - TRMJ_ECOLI -
7 PsiBlast_PDB 79.8640% -73 - C- -3IC6 - ? -
22 PsiBlast_CBE 79.5142%-168 - C3 -4CND - TRMJ_ECOLI -
47 HHSearch 79.3050% -45 * C3 *5GMB - ? -
21 PsiBlast_CBE 79.2042%-167 - C3 -4CNE 7.3 TRMJ_ECOLI
48 HHSearch 78.8550% -57 - C3 -5GM8 7.2 ?