@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VLQ1: (2017-11-04 )
MQEEPSPSWSMRGLRKWLGTAPETRDELLKLVQNSRRFLEPDTVAMLEGVLDLPATKIREVMTPRTAMISMQEDDQLLDILHVLVESAHSRFPVFSADQPDNVVGILLAKDLLPFLTEPNTKLDIGSLMRQPLFVPESARSDQVLRMLKHTQTHIAIVIDEYGSTAGLVTLEDILEEIVGEIEDEHDTADEDAQYIVPDNDHTIANAWMVQALTPIEHFNTVLDADFSDDEVETVGGLLLQEIGLVSDLQGQTVELGNWLFTIVEADARTIHLIRAVRQ

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_B_6(4P1O)
CNNM2_MOUSE
[Raw transfer]




AMP_A_5(3NQR)
CORC_SALTY
[Raw transfer]




AMP_A_2(4HG0)
CORC_ECOLI
[Raw transfer]




AMP_A_3(3JTF)
?
[Raw transfer]




AMP_A_3(3LFR)
?
[Raw transfer]




ATP_A_4(4P1O)
CNNM2_MOUSE
[Raw transfer]




ADN_A_3(3OI8)
?
[Raw transfer]




ADN_A_3(3OI8)
?
[Raw transfer]




1 PsiBlast_PDB 88.0041%-141 - C1 -4HG0 4.3 CORC_ECOLI
4 PsiBlast_PDB 70.7546%-196 - C1 -3JTF 6.3 ?
5 PsiBlast_PDB 69.0340%-164 - C1 -3OI8 5.1 ?
3 PsiBlast_PDB 66.3846%-163 - C1 -3NQR 4.9 CORC_SALTY
43 HHSearch 66.3133%-152 - C1 -3LV9 - ? -
6 PsiBlast_PDB 66.0334%-144 - C1 -3LV9 - ? -
40 HHSearch 61.9731%-183 - C1 -3LHH - ? -
2 PsiBlast_PDB 59.7245% -94 - C1 -3LFR 5.7 ?
42 HHSearch 59.4933%-159 - C1 -3OCM - ? -
9 PsiBlast_PDB 59.4131%-172 - C1 -3LHH - ? -
41 HHSearch 58.5638% 12 - C1 -3OI8 5.1 ?
7 PsiBlast_PDB 57.1036%-105 - C1 -3OCM - ? -
11 PsiBlast_PDB 56.2531% -85 - C1 -3HF7 - ? -
30 Fugue 54.4131% -71 - C1 -3HF7 - ? -
15 PsiBlast_PDB 54.3635% -58 - C1 -5TSR - CNNM3_HUMAN -
12 PsiBlast_PDB 53.8435% -52 - C1 -5K25 - -
22 PsiBlast_CBE 53.6532% -44 - C1 -5LXQ - -
13 PsiBlast_PDB 53.4635% -54 - C1 -5K22 - -
20 PsiBlast_PDB 52.5932% -44 - C1 -5LXQ - CNNM2_MOUSE -
23 PsiBlast_CBE 52.0332% -17 - C1 -4IY0 - -