@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VM58: (2017-11-06 )
MLLEKILQSQGFGSRKYCQQLIKNGSVSIDGEVVSDLKKQFSPENFEFSVFGQNYQYREKIYIALRKPQGFECSHHPQHHQSVFSLLPETMIHRGVQAVGRLDQDTTGLLLLTDDGKYLQVLTHPRKHVPKVYHVTTYDPVTPEQIEMLIQGVNLHQEKEVFAATDVALLGTHQLTMTIHQGVYHQVKRMIAAVGNKVEKLHRHQIGQLVLPEIEDGDWVYLSEQEKQLAQNII

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

U_A_2(1KSV)
RSUA_ECOLI
[Raw transfer]




BU1_A_4(1VIO)
RSUA_HAEIN
[Raw transfer]




URA_A_2(1KSL)
RSUA_ECOLI
[Raw transfer]




URA_A_2(1KSK)
RSUA_ECOLI
[Raw transfer]




URA_A_2(1KSK)
RSUA_ECOLI
[Raw transfer]




URA_A_2(1KSK)
RSUA_ECOLI
[Raw transfer]




BU1_A_5(1VIO)
RSUA_HAEIN
[Raw transfer]




BU1_A_5(1VIO)
RSUA_HAEIN
[Raw transfer]




22 HHSearch 79.6438% -32 - C7 -1KSK 2.5 RSUA_ECOLI
23 HHSearch 76.7234% -18 - C7 -1VIO 2.0 RSUA_HAEIN
4 PsiBlast_PDB 75.0735% 2 * C7 *1VIO 2.7 RSUA_HAEIN
2 PsiBlast_PDB 74.0637% 11 - C7 -1KSL 2.5 RSUA_ECOLI
1 PsiBlast_PDB 73.5537% 15 - C7 -1KSK 2.5 RSUA_ECOLI
3 PsiBlast_PDB 72.3937% 12 - C7 -1KSV 4.0 RSUA_ECOLI
24 HHSearch 71.3127% -22 - C7 -3DH3 - RLUF_ECOLI -
26 HHSearch 70.9927%-127 - C7 -2GML - RLUF_ECOLI -
51 Fugue 68.6336% 75 - C7 -1KSK 2.5 RSUA_ECOLI
7 PsiBlast_PDB 66.2326% -19 - C7 -3DH3 - RLUF_ECOLI -
9 PsiBlast_PDB 63.9126%-107 - C7 -2GML - RLUF_ECOLI -
28 HHSearch 58.2629% 1 - C7 -2OML - RLUE_ECOLI -
5 PsiBlast_PDB 57.2031% 42 - C7 -4LAB - RLUB_ECOLI -
21 PsiBlast_CBE 52.3431% -39 - C7 -2OLW - RLUE_ECOLI -
6 PsiBlast_PDB 51.8031% -37 - C7 -2OLW - RLUE_ECOLI -
8 PsiBlast_PDB 51.2631% -24 - C7 -2OML - RLUE_ECOLI -
52 Fugue 48.1718% 12 - C7 -2IST - RLUD_ECOLI -
35 HHSearch 42.5316% -30 - C7 -2AUS - TRUB_PYRAB -
29 HHSearch 40.9018% -19 - C7 -1V9K - RLUC_ECOLI -
55 Fugue 39.9716% -87 * C6 *3P2H - ? -