@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VM64: (2017-11-06 )
MSNQLPVINLMGPTASGKTALACELYERGNFELISVDSALVYKDMDIGTAKPTREEQELYPHHLIDIITPLEVYSAAQFVEDACALIDEMHSRGKTPILVGGTMLYFKALLEGLSSNLPSADANVRAAIEEKAANEGWQAVYDELVAVDPAAGVKFKVSDKQRIIRALEVYHITGQPITKLQAEQPKNVPYRYTFHNYALLPDRVELHQRIEQRLSKMWDIGFLSEVESLIEKYDLDENLPSMRSVGYRQALEFLLKSDMSLKKKQEMEDKALFATRQLAKRQYTWLRSLQEIHDFKTYLTIKQAKEDLRNSYG

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

DPO_A_3(3CRQ)
MIAA_PSEAE
[Raw transfer]



DPO_A_4(3CRR)
MIAA_PSEAE
[Raw transfer]



DPO_A_4(3CRR)
MIAA_PSEAE
[Raw transfer]



PPV_B_17(3EPH)
MOD5_YEAST
[Raw transfer]



DST_B_6(2ZXU)
MIAA_ECOLI
[Raw transfer]



DST_A_5(2ZXU)
MIAA_ECOLI
[Raw transfer]



DST_A_5(2ZXU)
MIAA_ECOLI
[Raw transfer]



DMA_A_6(3EPL)
MOD5_YEAST
[Raw transfer]



ATP_B_6(1KO5)
GNTK_ECOLI
[Raw transfer]



OSA_A_4(3N2E)
AROK_HELPY
[Raw transfer]



EPE_G_7(1Z6G)
?
[Raw transfer]
3 PsiBlast_PDB 92.5950%-104 - C4 -2ZM5 - MIAA_ECOLI -
1 PsiBlast_PDB 92.5152% -96 - C4 -3FOZ - MIAA_ECOLI -
22 PsiBlast_CBE 92.3452% -95 - C4 -2ZXU 3.5 MIAA_ECOLI
2 PsiBlast_PDB 92.0952% -98 - C4 -2ZXU 4.7 MIAA_ECOLI
38 HHSearch 90.1650% -77 - C4 -2ZXU 4.7 MIAA_ECOLI
39 HHSearch 89.8950% -74 - C4 -3FOZ - MIAA_ECOLI -
34 HHSearch 79.5051% -96 - C4 -3CRR 3.3 MIAA_PSEAE
6 PsiBlast_PDB 79.2049% -97 - C4 -3CRR 4.4 MIAA_PSEAE
5 PsiBlast_PDB 79.0349%-101 - C4 -3CRQ 3.7 MIAA_PSEAE
4 PsiBlast_PDB 78.5049% -94 - C4 -3CRM - MIAA_PSEAE -
35 HHSearch 78.0035%-108 - C4 -3EXA - MIAA_BACHD -
36 HHSearch 77.1635%-117 - C4 -3EXA - MIAA_BACHD -
8 PsiBlast_PDB 77.1136%-123 - C4 -3EXA - MIAA_BACHD -
52 Fugue 75.6128% -82 - C4 -3EPH - MOD5_YEAST -
37 HHSearch 74.9829% -98 * C4 *3EPH 2.7 MOD5_YEAST
9 PsiBlast_PDB 73.1029% -88 - C4 -3EPH - MOD5_YEAST -
11 PsiBlast_PDB 72.9329% -86 - C4 -3EPK - MOD5_YEAST -
33 HHSearch 71.8430% -51 - C4 -3D3Q - MIAA_STAES -
13 PsiBlast_PDB 70.3232% -42 - C4 -3D3Q - MIAA_STAES -
32 HHSearch 70.0630% -51 - C4 -3D3Q - MIAA_STAES -