@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VMH1: (2017-11-08 )
MKKMLMALSLTGALLGGTAAWAEETVTTPTSEVTATSTSEAPATIAAAPAAEETPAAPTPTAKLDTGDTSWILISTALVLLMTIPGLALFYGGMVRKKNVLSTMMFSLSAAILVSLLWVIAGYSIAFSGTGAYFGDLSKAMLNGVAFDALSGTIPESLFVIFQMTFAIITVAILSGSIADRMKYSAFMAFIAIWVLVVYAPITHWVWAADGWLFKAGALDFAGGTVVHINSGVAGLVAAYMLGKRIGLGRESMAPHNLTLTVIGASLLWVGWFGFNGGSALGAGARASMAILVTQVAAAAAAFSWLVVERMIRGKASVLGGASGAVAGLVVITPAAGFVGVGGALVMGLIGGVVCFWGITALKRLLKADDALDAFGLHAVGGIVGAILTGVFYSDEIIKAANVALAPTFAGQLWVQVEGVLATMVYSGIATFIILKVIDLIIGLRVNSDDERMGLDLSQHGERIE

Atome Classification :

(22 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

LDA_A_3(3C1I)
AMTB_ECOLI
[Raw transfer]




XE_A_2(2B2J)
?
[Raw transfer]




XE_A_3(2B2J)
?
[Raw transfer]




XE_A_3(2B2J)
?
[Raw transfer]




IMD_A_3(3C1J)
AMTB_ECOLI
[Raw transfer]




BOG_A_2(1U7G)
AMTB_ECOLI
[Raw transfer]




NH3_A_6(1U7G)
AMTB_ECOLI
[Raw transfer]




NH3_A_6(1U7G)
AMTB_ECOLI
[Raw transfer]




4 PsiBlast_PDB 84.0148%-164 - C2 -2NS1 - AMTB_ECOLI -
27 Fugue 83.6437%-112 - C2 -5AEX - MEP2_YEAST -
2 PsiBlast_PDB 83.4848%-162 - C2 -2NUU - AMTB_ECOLI -
10 PsiBlast_PDB 82.4447%-177 - C2 -1U7C - AMTB_ECOLI -
41 HHSearch 81.5647%-175 - C2 -1U7C - AMTB_ECOLI -
11 PsiBlast_PDB 81.2547%-174 - C2 -1U7G 4.2 AMTB_ECOLI
38 HHSearch 81.1047%-151 - C2 -2B2J 2.8 ?
21 PsiBlast_CBE 80.8948%-186 - C2 -4NH2 - AMTB_ECO57 -
42 HHSearch 80.8847%-174 - C2 -1U7G 2.7 AMTB_ECOLI
23 PsiBlast_CBE 80.4048%-184 - C2 -4NH2 - AMTB_ECO57 -
16 PsiBlast_PDB 80.3937%-116 - C2 -5AEX - MEP2_YEAST -
3 PsiBlast_PDB 80.3848%-182 - C2 -1XQE - AMTB_ECOLI -
37 HHSearch 80.3137%-122 - C2 -5AEX - MEP2_YEAST -
22 PsiBlast_CBE 80.2648%-181 - C2 -4NH2 - AMTB_ECO57 -
5 PsiBlast_PDB 80.0648%-176 - C2 -2NOW - AMTB_ECOLI -
25 PsiBlast_CBE 80.0548%-185 - C2 -4NH2 - AMTB_ECO57 -
39 HHSearch 80.0247%-151 - C2 -2B2H - ? -
1 PsiBlast_PDB 80.0148%-188 - C2 -4NH2 - AMTB_ECO57 -
8 PsiBlast_PDB 79.9647%-174 - C2 -2NPK - AMTB_ECOLI -
6 PsiBlast_PDB 79.9448%-179 - C2 -3C1I 4.6 AMTB_ECOLI
15 PsiBlast_PDB 79.7346%-136 - C2 -2B2J Calc... ?
7 PsiBlast_PDB 79.4647%-179 - C2 -3C1J 3.9 AMTB_ECOLI