@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VMM0: (2017-11-09 )
MPNSQAKKGLFQFYPHNLIWLGLSVLAIVLDQWTKWIASTHMNYADPVPVLPFLNWTLLHNYGAAFSFLSDAGGWQRYFFTSLAGLVSILFVFWLLRMPKKMVVLPVAIALILGGALGNLIDRITLGYVVDFIHVYYQNHHFPAFNIADSAITLGTILLLIDTFFLEKQRPKNSDA

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

OLC_B_21(5DIR)
LSPA_PSEAE
[Raw transfer]




SER_D_(5DIR)
LSPA_PSEAE
[Raw transfer]




OLC_A_10(5DIR)
LSPA_PSEAE
[Raw transfer]




OLC_A_10(5DIR)
LSPA_PSEAE
[Raw transfer]




OLC_A_10(5DIR)
LSPA_PSEAE
[Raw transfer]




5BV_B_20(5DIR)
LSPA_PSEAE
[Raw transfer]




5BV_A_9(5DIR)
LSPA_PSEAE
[Raw transfer]




17 Fugue 78.3749%-131 - C3 -5DIR 4.9 LSPA_PSEAE
4 PsiBlast_CBE 77.1050%-137 - C3 -5DIR 3.6 LSPA_PSEAE
1 PsiBlast_PDB 76.8050%-134 - C3 -5DIR 4.9 LSPA_PSEAE
7 HHSearch 74.2646%-135 - C3 -5DIR 4.9 LSPA_PSEAE
8 HHSearch 74.2146%-147 - C3 -5DIR - LSPA_PSEAE -
6 PsiBlast_CBE 73.2150%-132 - C3 -5DIR 3.6 LSPA_PSEAE
18 Fugue 48.2122% -33 - C3 -4QT4 - PTH_STRPZ -
25 Fugue 45.8510%-179 * C4 *2HF6 - COPZ1_HUMAN -
21 Fugue 41.7916% - - C3 -4MT7 - ARHG9_RAT -
22 Fugue 39.3518% -70 - C2 -2JTD - -
26 Fugue 38.3812%-114 - C4 -1K0S - CHEW_THEMA -
3 PsiBlast_PDB 38.3341%-176 - C6 -5ESX - ? -
2 PsiBlast_PDB 37.6841%-169 * C6 *5ESW - ? -
15 HHSearch 35.1722%-184 * C5 *4L2I - ? -
16 HHSearch 34.2533% -71 - C5 -1EFP - ETFA_PARDE -
19 Fugue 32.3212% -34 - C3 -3AYV - ? -
11 HHSearch 30.165%-245 - C3 -4B19 - ? -
20 Fugue 27.4933%-223 - C3 -2MG1 - ? -
24 Fugue 26.9130%-185 * C3 *2FLY - -
14 HHSearch 24.1318%-195 - C3 -1RKL - OST4_YEAST -