@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VMM2: (2017-11-09 )
MKLLRLNALSPNFQLPQTAVTIGNFDGVHLGHQAMIAQLKKIAAAQGLKTLVMIFEPQPLEFFKGYDAPPRINSLREKVEYLAELGVDYIAVAKFDQHFRSMSASEFADLLKDKLNAQALVLGDDFHFGKDRQGNSEFLKNYGFQVTNLHTIELEGERVSSTRIRQVLQVGNLALAAKLLGRPYSITGRVQYGDQIGRTLDFPTINVRLNRHKPCLNGIYGVEVICETTSLTQKVLQDNPEKPGIAGYHENSLYGAGHVGTRPAIQQEHPEWRLEVHFPDVSANLYGLFMRVTFLHYLHGELNYPSLEALKAGIDNDVQQLRQYRNDTTQFPF

Atome Classification :

(22 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PPV_B_6(5FNZ)
RIBF_CORAM
[Raw transfer]



PPV_B_5(4UZF)
RIBF_CORAM
[Raw transfer]



PPV_A_3(5FNZ)
RIBF_CORAM
[Raw transfer]



PPV_B_6(2X0K)
RIBF_CORAM
[Raw transfer]



PPV_B_6(4UZE)
RIBF_CORAM
[Raw transfer]



PPV_B_5(5FO0)
RIBF_CORAM
[Raw transfer]



PPV_A_3(5FO0)
RIBF_CORAM
[Raw transfer]



PPV_A_4(2X0K)
RIBF_CORAM
[Raw transfer]



CIT_D_4(1MRZ)
?
[Raw transfer]



CIT_C_3(1MRZ)
?
[Raw transfer]
40 HHSearch 88.2332%-111 - C3 -1S4M - ? -
39 HHSearch 87.2632%-122 - C3 -1MRZ 3.4 ?
28 Fugue 86.7731%-110 - C3 -1MRZ - ? -
6 PsiBlast_PDB 84.6929%-104 - C3 -1S4M - ? -
2 PsiBlast_PDB 84.4329%-104 - C3 -1MRZ 3.8 ?
12 PsiBlast_PDB 83.4129% -99 - C3 -2I1L - ? -
3 PsiBlast_PDB 83.0529%-101 - C3 -1T6X - ? -
5 PsiBlast_PDB 82.2329%-100 - C3 -1T6Z - ? -
38 HHSearch 81.5631% -27 * C3 *5FO1 - RIBF_CORAM -
26 PsiBlast_CBE 81.1031% -23 - C3 -5FNZ 3.0 RIBF_CORAM
7 PsiBlast_PDB 81.0931% -19 - C3 -5FO0 4.3 RIBF_CORAM
13 PsiBlast_PDB 81.0731% -19 - C3 -5FO1 - RIBF_CORAM -
27 PsiBlast_CBE 81.0431% -17 - C3 -5FO1 - RIBF_CORAM -
24 PsiBlast_CBE 81.0031% -17 - C3 -4UZE 3.1 RIBF_CORAM
1 PsiBlast_PDB 80.6331% -17 - C3 -4UZF - RIBF_CORAM -
9 PsiBlast_PDB 80.3831% -19 - C3 -4UZE - RIBF_CORAM -
23 PsiBlast_CBE 79.9231% -20 - C3 -2X0K 2.8 RIBF_CORAM
8 PsiBlast_PDB 79.8031% -19 - C3 -2X0K 3.0 RIBF_CORAM
22 PsiBlast_CBE 79.7531% -17 - C3 -5FO0 3.2 RIBF_CORAM
36 HHSearch 79.6831% -23 - C3 -3OP1 - ? -
21 PsiBlast_CBE 79.6231% -18 - C3 -4UZF 3.2 RIBF_CORAM
11 PsiBlast_PDB 78.4531% -25 - C3 -5FNZ 4.9 RIBF_CORAM