@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VMP4: (2017-11-09 )
MRIDQRALDQLREVKITRNYTRYAEGSVLVEFGHTKVLCTASIDNSVPRFLKGQGQGWVTAEYGMLPRSTHSRCDREAARGKQTGRTQEIQRLIGRSLRAMVDLKKLGENTITIDCDVIQADGGTRTASITGAAVALVDAMNVLLAQKKIKQDPLKGLVAAISVGMYQDEVLLDLCYEEDSNCQTDLNVVMTQAGEFIEIQGTAEDKPFTRAQSNAMLEMAEKGIAELIKKQQEALGW

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ADP_A_3(2PO0)
RRP41_PYRAB
[Raw transfer]



CDP_A_3(2PO2)
RRP41_PYRAB
[Raw transfer]



UDP_A_3(2PNZ)
RRP41_PYRAB
[Raw transfer]



NACID_Z_12(3M7N)
RRP41_ARCFU
[Raw transfer]
-
NACID_X_10(3M7N)
RRP41_ARCFU
[Raw transfer]
-
54 HHSearch 89.1253%-101 - C1 -1UDO - RNPH_AQUAE -
42 Fugue 88.9752%-102 - C1 -1UDO - RNPH_AQUAE -
2 PsiBlast_PDB 88.6767% -91 - C1 -1R6L - RNPH_PSEAE -
55 HHSearch 88.6168% -91 - C1 -1R6L - RNPH_PSEAE -
1 PsiBlast_PDB 88.5468% -91 - C1 -1R6M - RNPH_PSEAE -
52 HHSearch 88.5357% -84 - C1 -3DD6 - RNPH_BACAN -
8 PsiBlast_PDB 88.4654%-101 - C1 -1UDN - RNPH_AQUAE -
3 PsiBlast_PDB 88.3757% -83 - C1 -3DD6 - RNPH_BACAN -
11 PsiBlast_PDB 88.2053%-102 - C1 -1UDS - RNPH_AQUAE -
10 PsiBlast_PDB 86.9753% -98 - C1 -1UDO - RNPH_AQUAE -
9 PsiBlast_PDB 86.7153%-102 - C1 -1UDQ - RNPH_AQUAE -
7 PsiBlast_PDB 84.8956% -73 - C1 -3B4T - RNPH_MYCTU -
56 HHSearch 84.2856% -75 - C1 -3B4T - RNPH_MYCTU -
57 HHSearch 84.1956% -73 - C1 -3B4T - RNPH_MYCTU -
5 PsiBlast_PDB 83.7856% -76 - C1 -1OYR - RNPH_BACSU -
4 PsiBlast_PDB 80.8456% -83 - C1 -1OYP - RNPH_BACSU -
6 PsiBlast_PDB 80.7155% -88 - C1 -1OYS - RNPH_BACSU -
53 HHSearch 77.5657% -33 - C1 -1OYR - RNPH_BACSU -
69 HHSearch 63.6330% -30 - C1 -3M7N 3.9 RRP41_ARCFU
43 Fugue 61.1725% -95 - C1 -3HKM - EXOS5_ORYSJ -