@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VMY1: (2017-11-11 )
MAQIIAIANQKGGVGKTTTAVNLAASLAVLKKRVLLVDIDSQGNATMGSGIQKNDLLYSITDVLLGEVPIETAIQKAEVGYKVLGSNRELSGVELAIAEQEGREFILKNALSEIRDSFDYIIVDCAPSLSLITVNALAAVDGVIIPMQCEYYALEGLADLTQTIDRIQKALNPDLEIIGVLRTMYDVRNALTRDVSAELEQYFGKKLYDTVIPRNVRLAEAPAHGLPVIYFEKSSKGAVAYLNLAAEMLKKSKVKKGSKV

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_A_5(2BEK)
SOJ_THET2
[Raw transfer]




ATP_D_11(2BEK)
SOJ_THET2
[Raw transfer]




ATP_B_7(2BEK)
SOJ_THET2
[Raw transfer]




ADP_A_2(2BEJ)
SOJ_THET2
[Raw transfer]




ANP_B_5(5IF9)
?
[Raw transfer]




ANP_B_5(5IF9)
?
[Raw transfer]




ADP_A_3(5IHP)
?
[Raw transfer]




ADP_B_5(5IHP)
?
[Raw transfer]




ATP_D_11(2BEK)
SOJ_THET2
[Raw transfer]




ATP_D_11(2BEK)
SOJ_THET2
[Raw transfer]




ATP_A_5(2BEK)
SOJ_THET2
[Raw transfer]




21 PsiBlast_CBE 88.1747%-129 - C2 -2BEK 8.3 SOJ_THET2
1 PsiBlast_PDB 88.1748%-120 - C2 -2BEJ 7.4 SOJ_THET2
2 PsiBlast_PDB 87.7047%-126 - C2 -2BEK 8.0 SOJ_THET2
22 PsiBlast_CBE 87.6747%-124 - C2 -2BEK 3.3 SOJ_THET2
23 PsiBlast_CBE 87.1747%-127 - C2 -2BEK 7.9 SOJ_THET2
150 HHSearch 83.5540%-136 - C2 -5IF9 6.2 ?
25 PsiBlast_CBE 82.5940%-137 - C2 -5IF9 6.2 ?
156 HHSearch 82.3746% -73 - C2 -2BEK 3.3 SOJ_THET2
24 PsiBlast_CBE 82.3241%-135 - C2 -5IHP 5.9 ?
4 PsiBlast_PDB 81.8441%-136 - C2 -5IHP 5.5 ?
3 PsiBlast_PDB 69.2741% - - C- -4PFS - ? -
172 HHSearch 65.1327% -34 - C2 -1HYQ - ? -
14 PsiBlast_PDB 62.0527% 0 - C- -3PG5 - ? -
9 PsiBlast_PDB 61.8028% 3 - C2 -1G3R - ? -
10 PsiBlast_PDB 61.4127% -10 - C2 -1ION - ? -
8 PsiBlast_PDB 61.4028% 5 - C2 -1G3Q - ? -
15 PsiBlast_PDB 61.2328% -13 - C2 -1HYQ - ? -
146 Fugue 60.3521% 3 - C2 -3Q9L - MIND_ECOLI -
163 HHSearch 60.0128% 1 * C2 *1G3Q - ? -
166 HHSearch 59.7821% 1 - C2 -3Q9L - MIND_ECOLI -