@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VND1: (2017-11-13 )
MDDQKETIMQTFSPKAVIERLQNIVGRSYVLTDDQSTRQYRQGRRFGEGKVLAVVVPGTLLEQWQVLQAAIEAGCIVIMQAANTGLTGGSTPYGDDYDRPVLVMSTRRLKGIQVIHDGKQVICLPGATLDNLEQILKGYDREPHSVIGSSCIGASVLGGVCNNSGGALVRRGPAYTELALYAQVNAAGQLELVNHLGVNLGSTPEEILTRLEKQQYQAVDILDDNEKQASDHRYGHDVTQVDEDTPARFNADPSRLFEASGSAGKVCVFAVRLDTYEKVESSVFYIGSNDADDLTAIRRYLLTSLPSLPIAGEYIHRDAYLIGEKYGKDTFLFIEKFGTANVPKAFAMKDKVDGFLEKFKIKGLTDQILQAITFFLPSHLPKRMTEYRDRYEHHLVLRVENNSKAQTEQFLKEYFTVHQSGNYFVCSEEEGRKAFLHRFAIAGAAIRYRDTHRSEVEDIVALDIALRRNDREWVEQLPAEMEKKIIHKLYYGHFFCHVFHQDYILKKGHDPLEIEHQMWKLLDARRAEYPAEHNVGHLYIAKPALANFYQKLDPTNSFNVGIGHTSKLKYWGKAKS

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

FAD_D_4(1F0X)
DLD_ECOLI
[Raw transfer]



FAD_C_3(1F0X)
DLD_ECOLI
[Raw transfer]



FAD_C_3(1F0X)
DLD_ECOLI
[Raw transfer]



FAD_D_4(1F0X)
DLD_ECOLI
[Raw transfer]
1 PsiBlast_PDB 97.7456% -55 - C1 -1F0X 13.5 DLD_ECOLI
22 Fugue 97.6257% -54 - C1 -1F0X 13.5 DLD_ECOLI
21 PsiBlast_CBE 96.9956% -56 - C1 -1F0X 13.6 DLD_ECOLI
32 HHSearch 94.5356% -45 - C1 -1F0X 13.6 DLD_ECOLI
23 Fugue 58.1935% 19 - C1 -1F0X - DLD_ECOLI -
36 HHSearch 52.1619% 7 - C1 -3PM9 - ? -
24 Fugue 51.7819% 9 - C1 -3PM9 - ? -
33 HHSearch 48.7312% -3 - C1 -2UUU - ADAS_DICDI -
35 HHSearch 48.5714% -4 - C1 -5ADZ - ADAS_CAVPO -
34 HHSearch 48.3714% 0 - C1 -4BBY - ADAS_CAVPO -
28 Fugue 48.1211% -66 - C1 -2BVF - ? -
43 HHSearch 47.5812% -1 - C1 -1E8G - VAOX_PENSI -
27 Fugue 45.5612% -56 - C1 -2VFR - XYOA_STRCO -
50 HHSearch 44.6414% -61 - C1 -4PVK - ? -
51 HHSearch 44.0518% -49 - C1 -5D79 - BBE28_ARATH -
52 HHSearch 43.9618% -49 - C1 -5D79 - BBE28_ARATH -
41 HHSearch 43.5714% 17 - C1 -5FXD - ? -
38 HHSearch 43.0412% 12 - C1 -1WVF - DH4C_PSEPU -
39 HHSearch 42.6412% 12 - C1 -1WVE - DH4C_PSEPU -
40 HHSearch 41.9713% -23 - C1 -1W1O - CKX1_MAIZE -