@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VP39: (2017-11-19 )
MSQPTTPSQSVIPAWVDSSLLQGMLRGIERESLRMQSNGFLSQELHPKALGSALTHPKITTDYSEALMEFITSPQPTIGDALHELTDIHAVVHRHLENGEKLWPLSMPCTLDDNEERIRLAQYGTSNIGRFKTLYRRGLGIRYGRRMQTISGVHYNLSFPDSLFSALQAHETDEKLKALSLQDYRSHRYFGLIRNFIRLTPLVMFLVGASPSVCHCFLTGHEHHLLPLIKGSYYLPYATALRMGRLGYQNSAQKSLGIHYNNLTDYLDGLQKAVHSPYPPFSRLGLNDASGEPLQINDHVLQIENEYYSLVRPKQVPQAGETPSQALKNRGVGYVELRAVDVNPYSAIGVNETTAGFLEALALYCLLSDSPELLCPEQDLIEKNQTEVVNRGRAPNATITDLNGSYHIEDWARQHISKMQDCARLLDQTYATDLYSSALAVMQERIDEVDETLSAHVIDDTLKHGGTWSFGSHMAQLHAETYEKHEISAETLQYFEQLAVQSLQQQEQLEQDSQISFDQYLEQYR

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ADP_B_15(1VA6)
GSH1_ECOLI
[Raw transfer]



ADP_A_12(1VA6)
GSH1_ECOLI
[Raw transfer]



ADP_B_15(1VA6)
GSH1_ECOLI
[Raw transfer]



ADP_A_12(1VA6)
GSH1_ECOLI
[Raw transfer]



AMP_A_2(3NZT)
?
[Raw transfer]



AMP_A_2(3NZT)
?
[Raw transfer]



AMP_A_2(3NZT)
?
[Raw transfer]
10 PsiBlast_CBE 99.3838% 0 - C- -2D33 - GSH1_ECOLI -
12 PsiBlast_CBE 98.7338% 0 - C- -2D32 - GSH1_ECOLI -
3 PsiBlast_PDB 98.6338% 0 - C- -2D33 - GSH1_ECOLI -
2 PsiBlast_PDB 98.6338% 0 - C- -2D32 - GSH1_ECOLI -
11 PsiBlast_CBE 97.8838% 0 - C- -2D33 - GSH1_ECOLI -
9 PsiBlast_CBE 97.2838% 0 - C- -2D33 - GSH1_ECOLI -
16 HHSearch 97.0838% 0 - C- -2D33 - GSH1_ECOLI -
13 PsiBlast_CBE 93.2238% 0 - C- -2D32 - GSH1_ECOLI -
39 Fugue 86.3837% -39 - C4 -1VA6 5.6 GSH1_ECOLI
15 HHSearch 85.0535% -37 - C4 -3NZT 5.5 ?
38 Fugue 84.9634% -37 - C4 -3NZT 5.5 ?
4 PsiBlast_PDB 81.2038% 3 - C4 -1V4G - GSH1_ECOLI -
17 HHSearch 81.1138% -13 - C4 -1VA6 5.4 GSH1_ECOLI
14 PsiBlast_CBE 79.8838% 5 - C4 -1VA6 5.2 GSH1_ECOLI
1 PsiBlast_PDB 79.5038% 6 - C4 -1VA6 5.4 GSH1_ECOLI
5 PsiBlast_PDB 78.7134% -6 - C4 -3NZT 5.5 ?
40 Fugue 65.5627% 1 * C4 *3LN6 - GSHAB_STRA5 -
20 HHSearch 59.6929% 10 - C4 -3LN6 - GSHAB_STRA5 -
6 PsiBlast_PDB 48.3932% 37 - C4 -3LN6 - GSHAB_STRA5 -
21 HHSearch 43.2215% -19 - C4 -1R8G - GCS2_ECOLI -