@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VP98: (2017-11-20 )
MTSLAHHATENRSVAEFTEQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKSSGKPKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLIEGQGNWGSPDDPKSFAAMRYTEAKLSAYSELLLSELGQGTSEWQDNFDGSLKEPITLPARVPNILLNGTTGIAVGMATDIPPHNLREVVKGTIALIRNPQTSDEKLAEYIPAPDLPTKAEIITPPEELLKIQTTGRGSYRMRAVYTIEKNEIVITELPYQVSGSKVITQIADQMQAKKLPLVVDVRDESDHENPTRLVIVLRSNRIDAEAVMSHLFATTDLESSYRVNLNMIGEDGRPQVKSIRRILLEWIEIRKKTVTRRLQYHLNRIEKRLHILAGLLIAYLDIDTVIRIIREEDQPKPVLMEHFNIDEIQAEAILELKLRHLAKLEEMEIRHEQDELSAKAAIIREQLENPESLKNLIISELKEDAKKFGDERRSPIVARAEAVQIKEQDLMPAETVTVVLSEAGWVRAAKGADVDAENLNYRAGDQYLSHAVGKTNQRVYFLDETGRSYALPISNLPSARGLGDPLSSKLSPASGVSFIQVYLDDDESELIAASSAGYGFKTQTKQLDTNAKAGKTFLTVPDKAKALPLISAQNMTHLAVLSSAGRLLILDLAELPNLNKGKGNKLIQLEGKEQILSMTTLNLDEIIQVVAGQQHLKLKGDDLQKYMGKRASKGQLLPRGYQKANKLLIQR

Atome Classification :

(70 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NACID_E_5(3RAD)
PARC_STRPN
[Raw transfer]
-
NACID_F_7(5CDM)
GYRA_STAAN
[Raw transfer]
-
GOL_A_4(3ILW)
GYRA_MYCTU
[Raw transfer]



NACID_H_8(3RAF)
PARC_STRPN
[Raw transfer]
-
GOL_B_8(3ILW)
GYRA_MYCTU
[Raw transfer]



NACID_H_8(3LTN)
PARC_STRPN
[Raw transfer]
-
NACID_H_8(3RAE)
PARC_STRPN
[Raw transfer]
-
GOL_A_4(3ILW)
GYRA_MYCTU
[Raw transfer]



NACID_H_8(5CDP)
GYRA_STAAN
[Raw transfer]
-
MPD_B_5(3IFZ)
GYRA_MYCTU
[Raw transfer]



SM8_A_5(2Y3P)
GYRA_ECOLI
[Raw transfer]



NACID_H_8(3RAD)
PARC_STRPN
[Raw transfer]
-
MPD_A_3(3IFZ)
GYRA_MYCTU
[Raw transfer]



SM8_B_8(2Y3P)
GYRA_ECOLI
[Raw transfer]



TR6_H_11(4Z2E)
?
[Raw transfer]



NACID_H_6(2XCT)
GYRA_STAAN
[Raw transfer]
-
NACID_G_5(4I3H)
?
[Raw transfer]
-
NACID_F_6(3RAE)
PARC_STRPN
[Raw transfer]
-
NACID_F_6(3RAF)
PARC_STRPN
[Raw transfer]
-
NACID_C_6(5NPP)
?
[Raw transfer]
-
NACID_G_6(5CDP)
GYRA_STAAN
[Raw transfer]
-
NACID_F_4(2XCR)
GYRA_STAAN
[Raw transfer]
-
NACID_F_4(2XCR)
GYRA_STAAN
[Raw transfer]
-
NACID_A_4(5NPP)
?
[Raw transfer]
-
NACID_E_5(5IWI)
GYRA_STAAN
[Raw transfer]
-
NACID_E_5(5IWI)
GYRA_STAAN
[Raw transfer]
-
NACID_G_5(2XCT)
GYRA_STAAN
[Raw transfer]
-
NACID_F_4(2XCR)
GYRA_STAAN
[Raw transfer]
-
NACID_F_6(5IWM)
GYRA_STAAN
[Raw transfer]
-
NACID_F_6(3RAD)
PARC_STRPN
[Raw transfer]
-
NACID_F_4(5BS3)
GYRA_STAAU
[Raw transfer]
-
NACID_E_3(4BUL)
GYRA_STAAN
[Raw transfer]
-
NACID_F_4(5BS3)
GYRA_STAAU
[Raw transfer]
-
NACID_F_6(3LTN)
PARC_STRPN
[Raw transfer]
-
NACID_F_2(4PLB)
GYRA_STAAU
[Raw transfer]
-
NACID_G_6(5CDN)
GYRA_STAAN
[Raw transfer]
-
NACID_F_7(5CDR)
GYRA_STAAN
[Raw transfer]
-
NACID_W_8(2XCR)
GYRA_STAAN
[Raw transfer]
-
NACID_E_5(5IWI)
GYRA_STAAN
[Raw transfer]
-
NACID_F_4(2XCS)
GYRA_STAAN
[Raw transfer]
-
NACID_P_16(5CDN)
GYRA_STAAN
[Raw transfer]
-
NACID_O_8(5CDN)
GYRA_STAAN
[Raw transfer]
-
NACID_F_7(5CDR)
GYRA_STAAN
[Raw transfer]
-
NACID_F_2(4PLB)
GYRA_STAAU
[Raw transfer]
-
NACID_W_8(2XCR)
GYRA_STAAN
[Raw transfer]
-
NACID_E_3(4BUL)
GYRA_STAAN
[Raw transfer]
-
NACID_N_14(5CDN)
GYRA_STAAN
[Raw transfer]
-
NACID_F_4(2XCS)
GYRA_STAAN
[Raw transfer]
-
NACID_G_5(4I3H)
?
[Raw transfer]
-
NACID_Y_12(2XCT)
GYRA_STAAN
[Raw transfer]
-
TR6_F_9(4Z2E)
?
[Raw transfer]



NACID_F_6(5IWM)
GYRA_STAAN
[Raw transfer]
-
NACID_F_6(5CDQ)
GYRA_STAAN
[Raw transfer]
-
NACID_F_6(5CDO)
GYRA_STAAN
[Raw transfer]
-
NACID_F_6(5CDQ)
GYRA_STAAN
[Raw transfer]
-
NACID_N_8(5CDM)
GYRA_STAAN
[Raw transfer]
-
NACID_W_12(5CDQ)
GYRA_STAAN
[Raw transfer]
-
NACID_W_12(5CDQ)
GYRA_STAAN
[Raw transfer]
-
NACID_N_8(5CDM)
GYRA_STAAN
[Raw transfer]
-
NACID_F_6(5CDO)
GYRA_STAAN
[Raw transfer]
-
NACID_W_12(5CDO)
GYRA_STAAN
[Raw transfer]
-
NACID_I_6(5CDM)
GYRA_STAAN
[Raw transfer]
-
NACID_W_12(5CDO)
GYRA_STAAN
[Raw transfer]
-
113 HHSearch 90.8958% -74 - C5 -1ZVU - PARC_ECOLI -
1 PsiBlast_PDB 90.2757% -72 - C5 -1ZVU - PARC_ECOLI -
22 PsiBlast_CBE 80.8369% -82 - C6 -5EIX - ? -
23 PsiBlast_CBE 79.9669% -82 - C6 -5EIX - ? -
123 HHSearch 79.8269% -80 - C6 -5EIX - ? -
2 PsiBlast_PDB 79.7469% -80 - C6 -5EIX - ? -
21 PsiBlast_CBE 79.3069% -83 - C6 -5EIX - ? -
51 PsiBlast_CBE 67.8842% -66 - C6 -4Z2E 2.6 ?
54 PsiBlast_CBE 63.0042% -6 - C6 -4Z2C - ? -
116 HHSearch 62.7544% -1 - C6 -5IWI 6.1 GYRA_STAAN (first)
13 PsiBlast_PDB 62.4643% 1 - C6 -5IWI 6.1 GYRA_STAAN (first)
46 PsiBlast_CBE 62.4343% 2 - C6 -5CDN 2.8 GYRA_STAAN (first)
17 PsiBlast_PDB 62.4343% 1 - C6 -5CDQ 3.9 GYRA_STAAN
9 PsiBlast_PDB 62.4343% 2 - C6 -5CDP 4.0 GYRA_STAAN
18 PsiBlast_PDB 62.4043% 3 - C6 -5CDM 4.3 GYRA_STAAN
24 PsiBlast_CBE 62.1844% 3 - C6 -5NPP 3.5 ?
3 PsiBlast_PDB 62.1744% 2 - C6 -5NPP 3.2 ?
117 HHSearch 62.1044% 1 * C6 *5CDM 4.3 GYRA_STAAN
20 PsiBlast_PDB 62.0242% -4 - C6 -4Z2C - ? -
58 PsiBlast_CBE 61.9438% -10 - C6 -2Y3P 1.4 GYRA_ECOLI (first)
52 PsiBlast_CBE 61.9142% -4 - C6 -4Z2E 2.6 ?
29 PsiBlast_CBE 61.7643% 2 - C6 -5CDR 5.0 GYRA_STAAN
10 PsiBlast_PDB 61.7643% 1 - C6 -5CDR 3.9 GYRA_STAAN
16 PsiBlast_PDB 61.6343% 3 - C6 -5CDN 3.4 GYRA_STAAN (first)
6 PsiBlast_PDB 61.6043% 1 - C6 -4BUL 5.6 GYRA_STAAN
19 PsiBlast_PDB 61.5543% -2 - C6 -5CDO 3.6 GYRA_STAAN
12 PsiBlast_PDB 61.5343% 4 - C6 -5BS3 3.1 GYRA_STAAU (first)
35 PsiBlast_CBE 61.4843% 1 - C6 -4PLB 5.8 GYRA_STAAU (first)
11 PsiBlast_PDB 61.3943% 2 - C6 -4PLB 2.3 GYRA_STAAU (first)
30 PsiBlast_CBE 61.3843% 3 - C6 -5CDP 4.1 GYRA_STAAN
28 PsiBlast_CBE 61.3643% 5 - C6 -2XCS 5.5 GYRA_STAAN (first)
25 PsiBlast_CBE 61.3543% 1 - C6 -4BUL 4.4 GYRA_STAAN
14 PsiBlast_PDB 61.2943% 2 - C6 -5IWM 3.9 GYRA_STAAN (first)
36 PsiBlast_CBE 61.2743% 2 - C6 -5IWM 5.8 GYRA_STAAN
37 PsiBlast_CBE 61.2343% 8 - C6 -5IWI 3.5 GYRA_STAAN
43 PsiBlast_CBE 61.1543% 2 - C6 -5CDQ 1.7 GYRA_STAAN
4 PsiBlast_PDB 61.1043% 2 - C6 -2XCS 4.0 GYRA_STAAN (first)
59 PsiBlast_CBE 61.0938% -8 - C6 -2Y3P 2.3 GYRA_ECOLI (first)
34 PsiBlast_CBE 60.4243% 5 - C6 -5BS3 5.7 GYRA_STAAU (first)
27 PsiBlast_CBE 60.1943% 0 - C6 -2XCT 6.5 GYRA_STAAN
40 PsiBlast_CBE 60.1543% -1 - C6 -2XCR 4.8 GYRA_STAAN (first)
39 PsiBlast_CBE 60.1343% 3 - C6 -2XCR 3.9 GYRA_STAAN (first)
15 PsiBlast_PDB 59.2343% -0 - C6 -2XCR 3.7 GYRA_STAAN (first)
38 PsiBlast_CBE 59.2043% -2 - C6 -2XCR 3.7 GYRA_STAAN (first)
78 PsiBlast_CBE 59.0840% 9 - C6 -3ILW 2.8 GYRA_MYCTU
122 HHSearch 59.0344% 7 - C6 -2XCR 4.8 GYRA_STAAN (first)
120 HHSearch 58.9740% -1 - C6 -3ILW 2.4 GYRA_MYCTU
26 PsiBlast_CBE 58.9643% 5 - C6 -2XCT 5.7 GYRA_STAAN
55 PsiBlast_CBE 58.4740% 3 - C6 -3IFZ 3.2 GYRA_MYCTU
5 PsiBlast_PDB 58.0743% 2 - C6 -2XCT 2.6 GYRA_STAAN
82 PsiBlast_CBE 58.0639% 37 - C6 -4I3H 3.9 ?
79 PsiBlast_CBE 57.5940% 11 - C6 -3ILW 2.4 GYRA_MYCTU
95 PsiBlast_CBE 57.5739% 32 - C6 -3RAF 4.3 PARC_STRPN
98 PsiBlast_CBE 57.5139% 35 - C6 -3RAE 3.7 PARC_STRPN
81 PsiBlast_CBE 57.4239% 36 - C6 -4I3H 4.8 ?
100 PsiBlast_CBE 57.2839% 33 - C6 -3RAD 4.9 PARC_STRPN
96 PsiBlast_CBE 57.0839% 36 - C6 -3RAF 4.5 PARC_STRPN
99 PsiBlast_CBE 56.8639% 36 - C6 -3RAD 2.7 PARC_STRPN
97 PsiBlast_CBE 56.7239% 33 - C6 -3RAE 3.0 PARC_STRPN
102 PsiBlast_CBE 56.6639% 33 - C6 -3LTN 3.8 PARC_STRPN
101 PsiBlast_CBE 56.6339% 34 - C6 -3LTN 3.6 PARC_STRPN
56 PsiBlast_CBE 54.7740% 21 - C6 -3IFZ 2.8 GYRA_MYCTU
48 PsiBlast_CBE 48.3343% 23 - C6 -5CDO 4.6 GYRA_STAAN
45 PsiBlast_CBE 48.3043% 23 - C6 -5CDN 2.6 GYRA_STAAN
44 PsiBlast_CBE 47.1943% 33 - C6 -5CDN 3.0 GYRA_STAAN
42 PsiBlast_CBE 47.1543% 29 - C6 -5CDQ 4.7 GYRA_STAAN
49 PsiBlast_CBE 46.9943% 35 - C6 -5CDO 5.0 GYRA_STAAN
47 PsiBlast_CBE 46.6943% 29 - C6 -5CDO 2.8 GYRA_STAAN
50 PsiBlast_CBE 46.3943% 33 - C6 -5CDM 1.8 GYRA_STAAN
41 PsiBlast_CBE 46.2243% 33 - C6 -5CDQ 2.8 GYRA_STAAN