@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VPJ6: (2017-11-21 )
MRKPMIDSKAVVQAHNLFMTFKAENKKSADISAIVDLNMQIKKGELTALVGPDGAGKTTLLRLIAGLYKASSGSLHVLGLDIEKHPQVVQDRISYMPQRFGLYEDLSVQENLNLYADLHGVPKNVRNQRFKRLLEITDLTQFTQRLAGQLSGGMKQKLGLACTLVRSPELLLLDEPSVGVDPLSRRDLWIIIEQLVQEENLSVIISTAYMDEAEKCAYVYIMHEGKILRQGSPEQLKALVHEQTWQIKPSEQIKPRIVQAQLLGNSGEIIDAVPRGEQVNFISRQKELSTNILPLGLVANRRPPELEDAFMMLLQQNQKQQISISQQTFRSEQNNNSQSDQAVIVVKDLVRTFGDFTAVANTSFTVQRGEIFGLLGPNGAGKTTTFRMLCGLLPASSGYLEVAGKNLRTARAEARAKVGYVSQKFALYSNLTVLENLKFFGGAYGLSGKKLDQQIDKALQQYDLKPQIKSGDLPVGYKQRLSMAAALLHEPEILFLDEPTSGIDPLARHSFWYSIGKLANQGITIIITTHFMEEAEYCDRIAIQDAGKLLALGSPQQVRELASKDKHIVDMNEAFIAIVEQARALRHAG

Atome Classification :

(25 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_B_5(4QC2)
?
[Raw transfer]



ACP_B_6(5X40)
CBIO_RHOCB
[Raw transfer]



ACP_A_4(5X40)
CBIO_RHOCB
[Raw transfer]



ATP_A_3(4QC2)
?
[Raw transfer]



ADP_A_3(4P31)
LPTB_ECOLI
[Raw transfer]



ADP_B_5(4P32)
LPTB_ECOLI
[Raw transfer]



ADP_A_3(4P32)
LPTB_ECOLI
[Raw transfer]



ATP_C_3(1VCI)
?
[Raw transfer]



ADP_A_3(4YER)
?
[Raw transfer]
78 HHSearch 77.3220% 11 - C3 -5KO2 - MDR1A_MOUSE -
79 HHSearch 76.6120% 4 - C3 -5KO2 - MDR1A_MOUSE -
100 HHSearch 68.8845% -72 - C3 -4YER 6.4 ?
81 HHSearch 67.6419% -3 - C3 -4F4C - PGP1_CAEEL -
89 HHSearch 65.0120% -32 - C1 -2IW3 - EF3A_YEAST -
95 HHSearch 62.1120% -27 - C2 -2IX8 - -
48 PsiBlast_CBE 61.9134%-133 - C3 -2AWN - MALK_ECOLI -
38 PsiBlast_CBE 60.7434%-130 - C3 -3PUY - MALK_ECOLI -
44 PsiBlast_CBE 60.6034%-130 - C3 -3PUV - MALK_ECOLI -
34 PsiBlast_CBE 60.5234%-131 - C3 -3RLF - MALK_ECOLI -
32 PsiBlast_CBE 60.4934%-129 - C3 -4KI0 - MALK_ECOLI -
40 PsiBlast_CBE 60.4434%-129 - C3 -3PUX - MALK_ECOLI -
46 PsiBlast_CBE 58.7234%-123 - C3 -2AWO - MALK_ECOLI -
42 PsiBlast_CBE 58.7234%-127 - C3 -3PUW - MALK_ECOLI -
41 PsiBlast_CBE 58.7034%-126 - C3 -3PUW - MALK_ECOLI -
55 PsiBlast_CBE 58.5233%-127 - C3 -2R6G - MALK_ECOLI (first) -
37 PsiBlast_CBE 58.0234%-123 - C3 -3PUY - MALK_ECOLI -
33 PsiBlast_CBE 58.0234%-128 - C3 -3RLF - MALK_ECOLI -
1 PsiBlast_PDB 57.6535% -73 - C3 -1VPL - ? -
35 PsiBlast_CBE 56.8834%-137 - C3 -3PUZ - MALK_ECOLI -
25 PsiBlast_CBE 48.5231% -19 - C3 -4P32 6.5 LPTB_ECOLI
7 PsiBlast_PDB 48.1531% -25 - C3 -4P32 6.4 LPTB_ECOLI
24 PsiBlast_CBE 47.2431% -15 - C3 -4QC2 7.5 ?
11 PsiBlast_PDB 46.9630% -25 - C3 -4P31 6.3 LPTB_ECOLI
8 PsiBlast_PDB 41.8433% -35 - C3 -1VCI 4.5 ?