@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VPX1: (2017-11-23 )
MDFNCDLVWMNSMSALLRFTQFVQKTFALWVIIFAALALWQPEFFVWLKAYIPWILGIIMLGMGMTMTVDDFKGVLQSPKAVLIGVVAQFVVMPGLAFILCKLFNLPPEIAVGVILVGCCPGGTASNVITYMAKGNVALSVACTSVSTLLAPVLTPAIFYLLASQWLKIDAASMFISILQVVLLPIVIGLILRTWLKRQVESYIQVMPLVSVIAIVAIVAAIIGGSKAAILQSGLLILAVVILHNGLGYLLGFAAARFFKLPYADSKAIAVEVGMQNSGLGVALAAVHFAASPITAVPSAIFSLWHNISGPALATYWASKHKQE

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PTY_A_11(3ZUY)
?
[Raw transfer]




PTY_A_11(3ZUX)
?
[Raw transfer]




PTY_A_11(3ZUX)
?
[Raw transfer]




LDA_A_13(3ZUX)
?
[Raw transfer]




LDA_A_9(3ZUY)
?
[Raw transfer]




MPG_B_6(4N7W)
?
[Raw transfer]




CIT_B_5(4N7W)
?
[Raw transfer]




CIT_A_3(4N7W)
?
[Raw transfer]




CIT_A_3(4N7W)
?
[Raw transfer]




PTY_A_12(3ZUY)
?
[Raw transfer]




PTY_A_12(3ZUY)
?
[Raw transfer]




1 PsiBlast_PDB 94.2260%-178 - C2 -3ZUX 6.7 ?
31 HHSearch 94.1560%-176 - C2 -3ZUX 6.8 ?
32 HHSearch 93.8860%-174 - C2 -3ZUY 2.6 ?
21 Fugue 93.8860%-174 - C2 -3ZUY 2.6 ?
2 PsiBlast_PDB 93.8560%-176 - C2 -3ZUY 6.8 ?
11 PsiBlast_CBE 83.6238%-164 - C2 -4N7W 5.6 ?
4 PsiBlast_PDB 82.8738%-173 - C2 -4N7X - ? -
33 HHSearch 82.2538%-165 - C2 -4N7W 3.6 ?
3 PsiBlast_PDB 81.8838%-163 - C2 -4N7W 3.6 ?
27 Fugue 55.3319%-128 - C2 -4CZB - NAH1_METJA -
25 Fugue 49.0416%-166 - C2 -4XNV - P2RY1_HUMAN (first) -
10 PsiBlast_PDB 44.3327%-178 - C- -1QLV - 2PS_GERHY -
30 Fugue 43.5914%-106 - C2 -5F0J - VPS35_HUMAN -
23 Fugue 41.7616% -79 - C2 -1E6Y - MCRB_METBF -
22 Fugue 40.4814% -96 - C2 -1HBN - MCRB_METTM -
40 HHSearch 39.5714%-186 - C2 -4N7W - ? -
26 Fugue 34.1718% -79 - C2 -4LL8 - MYO4_YEAST -
24 Fugue 31.6814%-136 - C2 -2R9R - KCNA2_RAT (first) -
39 HHSearch 31.5912%-155 - C2 -1ZCD - NHAA_ECOLI -
29 Fugue 28.7315% - - C2 -3U4T - ? -