@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VPY0: (2017-11-23 )
MSDTHIPLPERLRPRDLSEIIGQDHLLGEHAPLRQMIDQGHLPSIIFWGPPGVGKTTIALLLAQAIDRPFVSLSALNTGVKELREVIAESGDLLTPVVFIDEIHRFNKSQQDALLGAVEKGKITLIGATTENPSFEVNSALLSRCQVYTLNSLDSEAIQTLLNNALQNDKFLKERYIHIEEYDALLQFAAGDARKALNLLDLIASTFEPEVENTITNAVVVKVAQQNIARYDKSGEQHYDLVSAFIKSIRGSDPDAALYWMARMLKGGEDPVFIARRMLIAASEDIGNSNPNALLLAGECFRSVQAVGMPEARIILGQTAVYLATSAKSNSTYLAINKALELAEKTANLPVPLHLRNAPTKLMKQQGYGINYLYPHDYPEHFVLQDYLPPELKGTKLYESARNKREVEGERLQQRRWQQEQ

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ANP_A_5(2CHG)
RFCS_ARCFU
[Raw transfer]



ANP_C_9(2CHG)
RFCS_ARCFU
[Raw transfer]
1 PsiBlast_PDB 72.6343% 1 - C2 -3PVS - RARA_ECOLI -
101 HHSearch 52.2827% -18 * C1 *2CHG 8.1 RFCS_ARCFU
6 PsiBlast_PDB 51.7629% -18 - C1 -1IQP - RFCS_PYRFU -
86 HHSearch 51.4426% -5 - C1 -1SXJ - RFC3_YEAST -
92 HHSearch 50.4727% -10 - C1 -1IQP - RFCS_PYRFU -
7 PsiBlast_PDB 49.1126% -28 - C1 -2CHG 9.0 RFCS_ARCFU
91 HHSearch 48.2227% -8 - C1 -1IQP - RFCS_PYRFU -
69 Fugue 47.1724% 28 - C1 -1IQP - RFCS_PYRFU -
4 PsiBlast_PDB 46.9225% -32 - C1 -1SXJ - RFC3_YEAST -
8 PsiBlast_PDB 46.8326% -28 - C1 -2CHQ - RFCS_ARCFU -
9 PsiBlast_PDB 46.4726% -32 - C1 -2CHV - RFCS_ARCFU -
19 PsiBlast_PDB 46.3725% -22 - C1 -3GLG - DPO3X_ECOLI -
88 HHSearch 46.1824% -19 - C1 -1SXJ - RFC4_YEAST -
13 PsiBlast_PDB 46.1625% -18 - C1 -3GLI - DPO3X_ECOLI -
82 HHSearch 45.6045%-200 - C2 -2QW6 - ? -
11 PsiBlast_PDB 45.4126% -30 - C1 -1NJF - DPO3X_ECOLI -
12 PsiBlast_PDB 45.2725% -20 - C1 -3GLF - DPO3X_ECOLI -
5 PsiBlast_PDB 45.1246%-186 - C2 -2QW6 - ? -
90 HHSearch 45.0524% -8 - C1 -1XXI - DPO3X_ECOLI -
68 Fugue 45.0145%-186 * C2 *2QW6 - ? -