@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VPZ0: (2017-11-24 )
MKTQRCGWCSDDPLYIAYHDEEWGKPEHDEARLFEMLCLEGQQAGLSWITVLKKRESYRQHFFNHPIADIAAFTDDFLETKLSDAGLIRHLGKLKAIRDNAIAWQALKAQVDDVSKWLWQFVDAAPQNNDVVDYRKAPAQTELSLKLSKTLKKNGFKFVGPTTCYAFMQAVGMVNDHENNCQFKAS

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ADK_A_6(2OFI)
?
[Raw transfer]




ADK_A_3(1P7M)
3MG1_ECOLI
[Raw transfer]




PGE_A_5(2OFK)
?
[Raw transfer]




PGE_B_6(2OFK)
?
[Raw transfer]




PGE_B_6(2OFK)
?
[Raw transfer]




NACID_C_1(2OFI)
?
[Raw transfer]

-

NACID_C_1(2OFI)
?
[Raw transfer]

-

NACID_B_2(2OFI)
?
[Raw transfer]

-

PGE_B_12(2OFK)
?
[Raw transfer]




1 PsiBlast_PDB 87.4755%-124 - C3 -2OFK 2.5 ?
29 HHSearch 87.3254%-119 - C3 -2OFK 2.5 ?
12 PsiBlast_CBE 87.1955%-124 - C3 -2OFK 2.9 ?
28 HHSearch 86.2853%-114 * C3 *2OFI 4.8 ?
5 PsiBlast_PDB 85.6153%-119 - C3 -2OFI 4.8 ?
21 Fugue 84.2651%-109 - C3 -1LMZ - 3MG1_ECOLI -
3 PsiBlast_PDB 84.2453%-117 - C3 -1NKU - 3MG1_ECOLI -
2 PsiBlast_PDB 83.7353%-113 - C3 -1LMZ - 3MG1_ECOLI -
4 PsiBlast_PDB 80.5453%-108 - C3 -1P7M 3.8 3MG1_ECOLI
30 HHSearch 73.3333% -98 - C3 -2JG6 - ? -
31 HHSearch 72.0633% -99 - C3 -4AI5 - ? -
8 PsiBlast_PDB 70.5333% -75 - C3 -4AI4 - ? -
20 PsiBlast_CBE 70.0633% -77 - C3 -4AI5 - ? -
16 PsiBlast_CBE 69.9034% -78 - C3 -4AIA - ? -
7 PsiBlast_PDB 69.2434% -74 - C3 -2JG6 - ? -
15 PsiBlast_CBE 69.1434% -76 - C3 -4AIA - ? -
6 PsiBlast_PDB 69.1434% -73 - C3 -4AIA - ? -
19 PsiBlast_CBE 68.6533% -74 - C3 -4AI5 - ? -
14 PsiBlast_CBE 68.5934% -74 - C3 -4AIA - ? -
9 PsiBlast_PDB 68.1133% -76 - C3 -4AI5 - ? -