@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VQ63: (2017-11-25 )
MTTKNQKISRRHISGVFLLNKPLGLSSNAALQKVRWLYRAQKAGHTGALDPLATGLLPICLGEATKFSHYLLDSTKRYQTTVRLGQTTTTGDVEGDILQERPIPVLSKELIEQTLEKFRGDIQQVPPMYSALKKEGKPLYELARKGIEIEREARPVTIYALELIEFTENSITLDVTCSKGTYIRVLGEDIGEALGCGGHLTMLHRIQTGHFELIPSYTIEYLESLTEEQREALLLPVYAPIYHFLKIQVPEGREKYFCNGLESNIDHSAEAEVLVFSGERCLGLAEITDKKRLVPKRILNL

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

URA_A_2(1KSK)
RSUA_ECOLI
[Raw transfer]




BU1_A_4(1VIO)
RSUA_HAEIN
[Raw transfer]




NACID_B_1(1K8W)
TRUB_ECOLI
[Raw transfer]

-

NACID_B_1(1K8W)
TRUB_ECOLI
[Raw transfer]

-

NACID_B_1(1K8W)
TRUB_ECOLI
[Raw transfer]

-

NACID_B_1(1ZL3)
TRUB_ECOLI
[Raw transfer]

-

25 HHSearch 88.5448% -73 - C4 -1K8W 17.8 TRUB_ECOLI
48 Fugue 86.7748% -70 - C4 -1K8W 17.8 TRUB_ECOLI
1 PsiBlast_PDB 85.8948% -78 - C4 -1R3F - TRUB_ECOLI -
2 PsiBlast_PDB 79.8247% 17 - C4 -1K8W 17.7 TRUB_ECOLI
3 PsiBlast_PDB 79.5747% 18 - C4 -1ZL3 14.1 TRUB_ECOLI
47 Fugue 76.3231% -90 - C4 -1R3E - TRUB_THEMA -
8 PsiBlast_PDB 73.6532% 0 - C- -2AB4 - TRUB_THEMA -
7 PsiBlast_PDB 73.6532% 0 - C- -1ZE2 - TRUB_THEMA -
27 HHSearch 73.5831% -87 - C4 -1R3E - TRUB_THEMA -
6 PsiBlast_PDB 72.5832% -97 - C4 -1R3E - TRUB_THEMA -
29 HHSearch 71.9231% -86 * C4 *2APO - TRUB_METJA -
28 HHSearch 71.5031% -83 - C4 -1ZE1 - TRUB_THEMA -
5 PsiBlast_PDB 70.7232% -93 - C4 -1ZE1 - TRUB_THEMA -
32 HHSearch 69.9328% -98 - C4 -2AUS - TRUB_PYRAB -
33 HHSearch 67.8927% -76 - C4 -2RFK - TRUB_PYRFU -
26 HHSearch 67.5035% -57 - C4 -1SGV - TRUB_MYCTU -
49 Fugue 66.8228%-103 - C4 -1SGV - TRUB_MYCTU -
9 PsiBlast_PDB 63.9429% -74 - C4 -2APO - TRUB_METJA -
4 PsiBlast_PDB 63.3440% -79 - C4 -1SGV - TRUB_MYCTU -
30 HHSearch 56.2628% - - C4 -3U28 - CBF5_YEAST -