@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VQA2: (2017-11-26 )
MSRAISHIDTFQGLILALQNYWAEQGCVVLQPYDMEMGAGTFHTATFLRALGPETWNAAYVQPSRRPKDGRYGENPNRLQHYYQFQVVLKPNPDNIQQLYLDSLKAIGIDTLTHDIRFVEDNWESPTLGAWGLGWEVWLNGMEVTQFTYFQQVGGVECYPVTGEITYGLERLAMYLQGVDSVYDLVWTKGQFGTVTYGDVFHQNEVEQSTYNFEYAPVDKLFELFDFYESEANRLMEAKLPLPAYEQVVKASHTFNLLDARGAISVTERQRYILRVRTLARAIAQSYVQARAELGFPMAEPHLRDEVLAQLKAQAESEAAKAEKN

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_A_4(3RGL)
SYGA_CAMJE
[Raw transfer]



ATP_A_4(3UFG)
SYGA_CAMJE
[Raw transfer]



ATP_A_4(3RGL)
SYGA_CAMJE
[Raw transfer]



LMR_B_5(3RF1)
SYGA_CAMJJ
[Raw transfer]



LMR_A_3(3RF1)
SYGA_CAMJJ
[Raw transfer]



GOL_B_9(3RF1)
SYGA_CAMJJ
[Raw transfer]
22 HHSearch 89.9762% -97 - C1 -3RF1 2.9 SYGA_CAMJJ
21 HHSearch 89.8159%-108 - C1 -5F5W - SYGA_AQUAE -
9 PsiBlast_CBE 89.0960%-109 - C1 -5F5W - SYGA_AQUAE -
7 PsiBlast_CBE 88.5760%-108 - C1 -5F5W - SYGA_AQUAE -
1 PsiBlast_PDB 88.5160%-109 - C1 -5F5W - SYGA_AQUAE -
23 HHSearch 88.5062% -96 - C1 -3RGL 4.8 SYGA_CAMJE
4 PsiBlast_PDB 88.1162% -96 - C1 -3UFG 7.0 SYGA_CAMJE
10 PsiBlast_CBE 88.0060%-109 - C1 -5F5W - SYGA_AQUAE -
3 PsiBlast_PDB 87.7262% -98 - C1 -3RGL 4.8 SYGA_CAMJE
2 PsiBlast_PDB 87.5762% -96 - C1 -3RF1 3.1 SYGA_CAMJJ
8 PsiBlast_CBE 87.4160%-108 - C1 -5F5W - SYGA_AQUAE -
24 HHSearch 63.6360% -4 - C1 -1J5W - SYGA_THEMA -
37 HHSearch 40.3518% -43 - C1 -3DSQ - ? -
25 HHSearch 39.7220% -17 - C1 -2ZTG - SYA_ARCFU -
32 HHSearch 39.6022% -6 - C1 -5KNN - SYAC_HUMAN -
29 HHSearch 39.0618% -17 - C1 -1YFR - SYA_AQUAE -
28 HHSearch 38.9122% 4 - C1 -3HXZ - SYA_ECOLI -
38 HHSearch 38.8318% -37 - C1 -3DSQ - ? -
27 HHSearch 38.4922% 4 - C1 -3HY0 - SYA_ECOLI -
30 HHSearch 38.4318% -10 - C1 -1YFS - SYA_AQUAE -