@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VQB7: (2017-11-26 )
MPIEFIATSKLPTAFGEFNISVFQDPVTGEEHVALSKGLENPPTDPVLVRVHSECLTGDAFASLKCDCGPQLQATQKLINEAGQGVILYLRQEGRGIGLTNKIRAYALQDQGHDTVDANLLLNLPADARRYDMCSIMLDHLKVKEVKLITNNPLKIQALKDQGINVVDRVPLTVGRNPFNEQYLKTKRERMAHLYQKDDF

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

G2P_B_7(2BZ0)
RIBA_ECOLI
[Raw transfer]




G2P_B_7(2BZ0)
RIBA_ECOLI
[Raw transfer]




PPV_B_4(4RL4)
RIBA_HELPY
[Raw transfer]




PPV_B_4(4RL4)
RIBA_HELPY
[Raw transfer]




PPV_A_3(4RL4)
RIBA_HELPY
[Raw transfer]




TAU_A_7(2BZ1)
RIBA_ECOLI
[Raw transfer]




TAU_A_7(2BZ1)
RIBA_ECOLI
[Raw transfer]




29 HHSearch 89.7557%-109 - C4 -2BZ1 3.1 RIBA_ECOLI
1 PsiBlast_PDB 88.9056%-114 - C4 -2BZ1 3.1 RIBA_ECOLI
28 HHSearch 88.5557%-110 - C4 -2BZ0 8.5 RIBA_ECOLI
16 PsiBlast_CBE 87.6856%-110 - C4 -2BZ0 8.5 RIBA_ECOLI
17 PsiBlast_CBE 79.6345%-100 - C4 -4RL4 4.1 RIBA_HELPY
3 PsiBlast_PDB 76.2745%-101 - C4 -4RL4 3.6 RIBA_HELPY
30 HHSearch 74.6345% -1 - C4 -4RL4 4.1 RIBA_HELPY
2 PsiBlast_PDB 68.3450% -64 - C4 -4I14 - RIBBA_MYCTA -
21 Fugue 48.9416% 2 - C4 -4L5C - ? -
14 PsiBlast_PDB 39.4937%-216 - C4 -2E87 - ? -
27 Fugue 39.2415% 57 - C1 -4PLO - -
23 Fugue 38.6615% 6 - C4 -1T8H - ? -
24 Fugue 38.5417% 14 - C4 -2KCW - YJAB_ECOLI -
12 PsiBlast_PDB 37.3524% 39 - C4 -5HKO - XYPA_MYCS2 -
40 HHSearch 35.0713%-108 - C4 -1Y9W - ? -
13 PsiBlast_PDB 34.3228% -92 - C4 -1LSS - TRKA_METJA -
41 HHSearch 33.9118% -29 - C4 -2HVW - ? -
36 HHSearch 32.5010% 7 * C4 *4FD4 - ? -
20 Fugue 32.0921% 3 - C3 -5FFL - CLM1_MOUSE -
39 HHSearch 30.228% 25 - C4 -5GI7 - ? -