@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VQD5: (2017-11-26 )
MTQTPEALTTEQFKQAIIDKGQYYHIYHPFHVMMYEGKATQQQIQAWVANRYYYQINIPLKDAAIMANCPDQRVRQEWIQRMIDQDGEYPDGGGREAWLRLAEAVGLSREQVISEELVLPGVRFAVDAYVNFARRASWREAASSSLTELFAPQIHQSRLESWPQHYPWIDDKGYEYFRSRLSQARRDVEHGLTITLDSFTTHEQQQRMLEILQFKLDILWSILDALTLAYVHNEAPYHSVTQERVWHKGLFK

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PQQ_A_3(3HLX)
PQQC_KLEP7
[Raw transfer]




PQQ_A_3(4NY7)
PQQC_KLEP7
[Raw transfer]




PQQ_D_4(1OTW)
PQQC_KLEPN
[Raw transfer]




PQQ_C_3(1OTW)
PQQC_KLEPN
[Raw transfer]




AHQ_A_2(3HNH)
PQQC_KLEP7
[Raw transfer]




PQQ_C_3(1OTW)
PQQC_KLEPN
[Raw transfer]




PQQ_B_10(4NY7)
PQQC_KLEP7
[Raw transfer]




PQQ_D_7(3HLX)
PQQC_KLEP7
[Raw transfer]




PQQ_D_7(3HLX)
PQQC_KLEP7
[Raw transfer]




PQQ_B_4(3HML)
PQQC_KLEP7
[Raw transfer]




PQQ_A_3(3HML)
PQQC_KLEP7
[Raw transfer]




PEO_E_5(1OTW)
PQQC_KLEPN
[Raw transfer]




PEO_F_6(1OTW)
PQQC_KLEPN
[Raw transfer]




3 PsiBlast_PDB 90.1165%-113 - C2 -3HLX 7.5 PQQC_KLEP7
25 HHSearch 89.9265%-107 - C2 -3HLX 7.1 PQQC_KLEP7
23 PsiBlast_CBE 89.6965%-109 - C2 -3HLX 7.1 PQQC_KLEP7
4 PsiBlast_PDB 89.5465%-111 - C2 -4NY7 8.1 PQQC_KLEP7
22 PsiBlast_CBE 89.3165%-107 - C2 -4NY7 7.8 PQQC_KLEP7
26 HHSearch 88.8565%-104 - C2 -1OTW 7.7 PQQC_KLEPN
1 PsiBlast_PDB 88.8065%-107 - C2 -1OTW 7.7 PQQC_KLEPN
21 PsiBlast_CBE 88.4565%-109 - C2 -1OTW 7.1 PQQC_KLEPN
2 PsiBlast_PDB 88.0365%-109 - C2 -1OTV - PQQC_KLEPN -
5 PsiBlast_PDB 87.1565%-122 - C2 -3HML 5.9 PQQC_KLEP7
24 PsiBlast_CBE 86.9565%-126 - C2 -3HML 4.9 PQQC_KLEP7
6 PsiBlast_PDB 83.3664%-109 - C2 -3HNH 5.5 PQQC_KLEP7
31 HHSearch 48.1916% -18 - C2 -1RCW - PQQCL_CHLTR -
48 Fugue 48.1014%-108 - C2 -1UDD - ? -
30 HHSearch 47.9316% -20 - C2 -1RCW - PQQCL_CHLTR -
39 HHSearch 47.8115% -23 - C2 -3DDE - ? -
40 HHSearch 47.6815% -25 - C2 -3DDE - ? -
29 HHSearch 46.2217% -26 - C2 -3BJD - ? -
46 Fugue 45.5919% -7 * C2 *1RCW - PQQCL_CHLTR -
7 PsiBlast_PDB 42.6221% -74 - C2 -1RCW - PQQCL_CHLTR -