@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VQK7: (2017-11-27 )
MLSRVVRQILQATVYDVAIETPLEAAPRISQKLNNTIRFKREDLQPVFSFKLRGAYNRISQLPKEQLERGVICASAGNHAQGVALSGQRLGIPAIIVMPSTTPDIKVQAVKRLGGQVVLHGDSFDIANKYAQQRAEAEGLVFIPPYDDELVIAGQGTIANEILRQWRDVEYVFVAVGGGGLIAGVAAYLGDVAPHVKVIGVEYEESACLKAALEANERVVLPHAGLFADGTAVAQIGALPFDIVRLRKSDNSGPIVEPDIVTVNTDEICAAIKDTFDENRSIVEPSGAMALAGIKKYVAEHKISGKNMVSIVCGANMNFDRLRYIAERTELGEQREAIYAVTLSEEKGAFLGFCRALQGRNITEFNYRANNTEEAQVFVGISLKGGDTERHEILEQLKQQNYVVDDLSDDEVAKLHIRYLIGGHANLDDERLFRVEFPERPGALLTFLTRLGPTHNITLFHYRNHGAAEGRVLVGLQATDAKQNPDGLIETLEQISYPYAEITDNVGYKRFLK

Atome Classification :

(25 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PDD_A_3(2ZPU)
SRR_SCHPO
[Raw transfer]



PDD_A_2(2ZR8)
SRR_SCHPO
[Raw transfer]



PLP_A_5(5CVC)
?
[Raw transfer]



PLP_A_9(1VE5)
?
[Raw transfer]



PLP_A_3(1V71)
SRR_SCHPO
[Raw transfer]



PLP_A_5(5CVC)
?
[Raw transfer]



PLP_A_9(1VE5)
?
[Raw transfer]



PLP_B_7(5CVC)
?
[Raw transfer]



PLP_C_3(1TDJ)
ILVA_ECOLI
[Raw transfer]



PLP_C_3(1TDJ)
ILVA_ECOLI
[Raw transfer]



PLP_C_11(1VE5)
?
[Raw transfer]



PLP_D_12(1VE5)
?
[Raw transfer]
31 HHSearch 90.3452% -94 - C2 -1TDJ 3.5 ILVA_ECOLI
1 PsiBlast_PDB 88.8851% -96 - C2 -1TDJ 3.5 ILVA_ECOLI
33 HHSearch 73.8851%-103 - C2 -3IAU - THD1_SOLLC -
32 HHSearch 73.6951%-105 - C2 -3IAU - THD1_SOLLC -
2 PsiBlast_PDB 73.4649%-103 - C2 -3IAU - THD1_SOLLC -
6 PsiBlast_PDB 62.1035% -98 - C2 -1V71 4.1 SRR_SCHPO
7 PsiBlast_PDB 61.3335% -96 - C2 -1WTC - SRR_SCHPO -
8 PsiBlast_PDB 61.0435% -83 - C2 -2ZPU 5.4 SRR_SCHPO
9 PsiBlast_PDB 60.5435% -81 - C2 -2ZR8 6.9 SRR_SCHPO
37 HHSearch 57.1131% -89 - C2 -5CVC 5.0 ?
42 HHSearch 56.1029% -61 - C2 -3L6B - SRR_HUMAN -
39 HHSearch 53.1932% -52 - C2 -2RKB - SDSL_HUMAN -
43 HHSearch 52.4629% -37 - C2 -1PWH - SDHL_RAT -
38 HHSearch 52.0930% -41 - C2 -4H27 - SDHL_HUMAN -
34 HHSearch 51.7633% 7 - C2 -2ZPU - SRR_SCHPO -
3 PsiBlast_PDB 51.2339% 14 - C2 -2GN0 - TDCB_SALTY -
10 PsiBlast_PDB 51.0431% -23 - C2 -3L6B - SRR_HUMAN -
19 PsiBlast_PDB 50.8126% -36 - C2 -1PWH - SDHL_RAT -
4 PsiBlast_PDB 50.7939% 13 - C2 -2GN1 - TDCB_SALTY -
11 PsiBlast_PDB 50.7033% -42 - C2 -5CVC 4.9 ?
24 PsiBlast_CBE 50.4333% -41 - C2 -5CVC 4.9 ?
46 HHSearch 49.7834% -16 - C2 -1VE5 4.0 ?
14 PsiBlast_PDB 45.6233% -19 - C2 -1VE5 4.0 ?
27 PsiBlast_CBE 38.7933% -19 - C2 -1VE5 4.0 ?
28 PsiBlast_CBE 37.8133% -14 - C2 -1VE5 3.9 ?