@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VQP4: (2017-11-28 )
MNNMHSQTTIAAIATPPGRGGVGVIRLSGPKAYNIAQKLTQKNLPEARMAGFRKFYDTDGSIMDEGIVLCFPNPHSFTGEDVVELQGHGGPVIQNALLGRLFELGANAAKAGEFSMRAFENGKMDLVQAEAIADLIDATSQAAARSAVRSLQGAFSTKINTVLEKLIHLRLHVEAAIDFPEEEIDFLADGKILALLEDVQQSVHAVQTSARQGQLLREGLQVVIAGKPNAGKSSLLNALAGVERAIVTDIAGTTRDVLHEKISLNGLPITLTDTAGLRETGDVVEKEGIRRAIKEIEQADLLLLVYDLNQGDDPLKLAQEYFAEHIEPRRLMLIGNKCDLTGQSAEISDYQGFRHITVSAKQEMGVQGLVDAITAHAGFHPEEDTFIARTRHLDAMTRTQLYLAEAREQLVVFNAGELVAESLRLAQNALGEITGDFSADDLLGKIFGSFCIGK

Atome Classification :

(23 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GDP_B_18(2GJ9)
MNME_ECOLI
[Raw transfer]



GDP_A_9(2GJA)
MNME_ECOLI
[Raw transfer]



GDP_B_10(2GJA)

[Raw transfer]



GDP_A_20(2GJ8)
MNME_ECOLI
[Raw transfer]



GNP_A_4(3IEV)
ERA_AQUAE
[Raw transfer]



GNP_A_3(1WF3)
ERA_THET8
[Raw transfer]



GDP_C_22(2GJ8)
MNME_ECOLI
[Raw transfer]



GDP_C_19(2GJ9)
MNME_ECOLI
[Raw transfer]



GDP_A_17(2GJ9)
MNME_ECOLI
[Raw transfer]



GCP_B_6(3GEI)
MNME_CHLTE
[Raw transfer]



GDP_D_20(2GJ9)

[Raw transfer]



GDP_A_2(3GEE)
MNME_CHLTE
[Raw transfer]



GDP_A_2(3GEE)
MNME_CHLTE
[Raw transfer]



GCP_A_4(3GEI)
MNME_CHLTE
[Raw transfer]



GCP_A_4(3GEI)
MNME_CHLTE
[Raw transfer]



GCP_A_2(4DCV)
DER_BACSU
[Raw transfer]



GDP_A_2(4DCU)
DER_BACSU
[Raw transfer]



GDP_A_2(4DCS)
DER_BACSU
[Raw transfer]



GDP_A_7(1MKY)
DER_THEMA
[Raw transfer]
110 Fugue 77.2535% -43 - C2 -1XZP - MNME_THEMA -
21 PsiBlast_CBE 73.8737% -20 - C2 -3GEI 6.4 MNME_CHLTE
122 HHSearch 72.6337% 5 - C2 -3GEH - MNME_NOSS1 -
123 HHSearch 72.4636% 19 - C2 -1XZP - MNME_THEMA -
5 PsiBlast_PDB 71.9237% -1 - C2 -3GEH - MNME_NOSS1 -
4 PsiBlast_PDB 71.2237% -18 - C2 -3GEI 6.7 MNME_CHLTE
3 PsiBlast_PDB 71.1537% -14 - C2 -3GEE 6.5 MNME_CHLTE
1 PsiBlast_PDB 70.2337% 40 - C2 -1XZP - MNME_THEMA -
2 PsiBlast_PDB 69.1337% 40 - C2 -1XZQ - ? -
120 HHSearch 68.8936% 8 - C2 -3GEE 6.5 MNME_CHLTE
121 HHSearch 68.8736% 11 - C2 -3GEI 6.7 MNME_CHLTE
8 PsiBlast_PDB 55.4649% -34 - C2 -2GJA 8.8 MNME_ECOLI
22 PsiBlast_CBE 54.0449% -32 - C2 -2GJA 9.1
9 PsiBlast_PDB 53.6649% -29 - C2 -2GJ8 9.0 MNME_ECOLI
23 PsiBlast_CBE 53.3349% -30 - C2 -2GJ9 7.9
7 PsiBlast_PDB 52.7949% -28 - C2 -2GJ9 8.4 MNME_ECOLI
25 PsiBlast_CBE 52.5849% -34 - C2 -2GJ9 8.6 MNME_ECOLI
24 PsiBlast_CBE 51.4449% -24 - C2 -2GJ9 8.7 MNME_ECOLI
130 HHSearch 49.2149% -9 - C2 -2GJ8 9.0 MNME_ECOLI
13 PsiBlast_PDB 44.4541% -88 - C2 -4DCU 4.7 DER_BACSU
11 PsiBlast_PDB 43.9341% -93 - C2 -4DCS 4.8 DER_BACSU
14 PsiBlast_PDB 43.1641% -98 - C2 -4DCV 4.3 DER_BACSU
10 PsiBlast_PDB 37.4041%-131 - C2 -1MKY 4.3 DER_THEMA