@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VQX3: (2017-11-29 )
MRPGKKSSSNKSRVMKNKYAHRSWLGAVCLLGCSLSYAAEEQFNDALNAANSGNTALLDQYQLAMQNDVLGYYPEYWKLNTNLGFQSPTSIVSFAQRYPQSAMAEKLAADYVEEKVKQADFASAQPILPYVSNPDQAENCALAQVRAKSGDALVFAEYKDVWLATESQPESCIGLGRMMLSSPLMSTQDKQQRLWVQLRAGLSGQALATAQTLGLNLSLAQLNQIQANPLNYLWSAPKTNDVDYAYLIFALGRLANNDLGNAFANVQRVAQGTPESVQKYLYRTVAYIGGTTVMKNNFNREVLQYFDASYGYPLSPEEAEIYARQAIRFSAWESLIRAIDSMSVSQKQEDRWQYWLARATEQRGDSNSKNTAQCIYKKLAESGDDYHNLLAKDRLGVRYNHQPYNDEPTASDLRRLDQNIHFNRAFTLRRINVNPTYTNREWNWAVRQAYLQHDDGLLLAAAKRAHDMGWYDRAIYAADRTTNKHNDTYRYVTPHKTNVVSHSYNAGIDPAWAYGLMRQESRFVTSARSHVGAGGLMQIMPDTAKLIARQMGETYNPAALSEMNTNIRYGTFYLSMIQGQLSNNPVLATAGYNAGPNRARRWQPDYQPIEADQYTETIPLLETRDYVKHVMTNATHYGVILGQGAQSLIQRMKVIPTRSSP

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

BLG_A_2(5MPQ)
?
[Raw transfer]



BLG_B_2(1SLY)
SLT_ECOLI
[Raw transfer]



GOL_A_21(1QSA)
SLT_ECOLI
[Raw transfer]



GOL_A_21(1QSA)
SLT_ECOLI
[Raw transfer]



NAG_A_2(1QTE)
SLT_ECOLI
[Raw transfer]
4 PsiBlast_PDB 77.7125% 17 - C4 -1SLY 5.4 SLT_ECOLI
3 PsiBlast_PDB 73.4524% 32 - C4 -1QTE 3.5 SLT_ECOLI
2 PsiBlast_PDB 72.6624% 31 - C4 -1QSA 2.8 SLT_ECOLI
1 PsiBlast_PDB 69.2541% 2 - C4 -5MPQ 5.7 ?
18 HHSearch 69.2021% 23 - C4 -1QSA - SLT_ECOLI -
41 Fugue 60.6119% 13 - C4 -1QSA - SLT_ECOLI -
43 Fugue 40.8731% -19 * C4 *1QSA 2.8 SLT_ECOLI
48 Fugue 39.4114% 31 - C3 -4HNY - NAT1_YEAST -
35 HHSearch 38.9910% -3 - C3 -4UI9 - CDC23_HUMAN -
11 PsiBlast_PDB 38.8930% -68 - C4 -4HJV - EMTA_ECOLI -
14 PsiBlast_CBE 38.8835% -87 - C4 -4CFO - MLTC_ECOLI -
13 PsiBlast_CBE 38.1635% -73 - C4 -4CFP - MLTC_ECOLI -
31 HHSearch 37.8810% -1 * C3 *5G05 - CDC23_HUMAN -
23 HHSearch 37.6110% -13 - C3 -4UI9 - APC7_HUMAN -
28 HHSearch 37.2411% -9 - C3 -5G05 - APC7_HUMAN -
7 PsiBlast_PDB 37.1535% -72 - C4 -4CFP - MLTC_ECOLI -
47 Fugue 36.7317% -13 - C1 -5DO7 - ABCG5_HUMAN -
10 PsiBlast_PDB 36.5830% -65 - C4 -3T36 - EMTA_ECOLI -
25 HHSearch 36.0710% -2 - C3 -2XPI - CUT9_SCHPO -
8 PsiBlast_PDB 35.3035% -80 - C4 -4CHX - MLTC_ECOLI -