@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VR81: (2017-12-01 )
MNSSLSLLHPYPFEKLNQLFKDTTPANLPLIPLSIGEPKHPAPEFVKQAIIDNFNHLSTYPNSKGLPELRQSIADWLTKRFKLNSISAENHILPVSGTREGIFSFVQTLINREDAPYVVMPNPFYQIYEGAALLAGAKPYFINCTEENGYLGDFDAVPAEVWEKTALLFVCTPGNPTGTVLSKEQFKKLIALSDQYNFVIASDECYSELWFDQAPTGLLEVCAELGRGDYKNCIVFHSLSKRSNLPGMRSGFIAGDAALLKPYLQYRTYHGAAMPVQHQLASIAAWNDESHVEENRKQYRAKFDLFQSELGHLLPLQKPDAGFYYWLKVDNDETFAKMLMEKAHIKVLPGRYLSRDTEQGNPGANHVRMALVADLAQCEEVVKRLKAIL

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PMP_A_2(1FG7)
HIS8_ECOLI
[Raw transfer]



PLP_A_3(1IJI)
HIS8_ECOLI
[Raw transfer]



MES_A_3(3JTX)
?
[Raw transfer]



MES_B_7(3JTX)
?
[Raw transfer]



GLU_C_3(1GDE)
?
[Raw transfer]



EDO_A_6(3EZS)
?
[Raw transfer]
1 PsiBlast_PDB 82.0848% 6 - C1 -3JTX 3.1 ?
2 PsiBlast_PDB 81.5537%-105 - C1 -3EZS 3.0 ?
24 HHSearch 77.8949% 30 - C1 -3JTX 3.2 ?
36 HHSearch 65.5835% -4 - C1 -3EZS - ? -
38 HHSearch 63.7726% -3 - C1 -1GDE - ? -
5 PsiBlast_PDB 63.0227% 3 - C1 -1GDE 3.3 ?
19 PsiBlast_PDB 61.7024% -2 - C1 -1BJW - AAT_THET8 -
45 Fugue 61.2123% -13 - C1 -1BJW - AAT_THET8 -
4 PsiBlast_PDB 61.0325% -15 - C1 -2X5D - ? -
6 PsiBlast_PDB 60.3127% 5 - C1 -1GD9 - ? -
40 HHSearch 59.9023% -19 - C1 -1J32 - ? -
13 PsiBlast_PDB 59.7424% -3 - C1 -5BJ3 - AAT_THET8 -
15 PsiBlast_PDB 59.4824% -3 - C1 -1B5P - AAT_THET8 -
11 PsiBlast_PDB 59.4824% -2 - C1 -1BKG - AAT_THET8 -
12 PsiBlast_PDB 59.2124% -4 - C1 -1B5O - AAT_THET8 -
34 HHSearch 58.8221% -16 - C1 -3E2Y - KAT3_MOUSE -
17 PsiBlast_PDB 58.8224% -1 - C1 -1GC4 - AAT_THET8 -
18 PsiBlast_PDB 58.7924% -3 - C1 -5BJ4 - AAT_THET8 -
16 PsiBlast_PDB 58.0424% -2 - C1 -1GC3 - AAT_THET8 -
20 PsiBlast_PDB 57.2924% -25 - C1 -1J32 - ? -