@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VR87: (2017-12-01 )
MSQKKSVLFQQLLPVIKQYQQSGFTHEKIVELLKDQHDLNLVTVKTFKSYLYRYAKVNPAMSKNTATLQSMPTSREIKKSSKLEHVCYDIRGPVLRAANEMEEQGHKIIKLNIGNPAPFGFEAPQEIINDVALNLPNAIGYVDSKGIFPARKAICQYYQQKGILNMHVNDVYIGNGVSELIVMAMQGLLDDGDEMLIPMPDYPLWTAAVNLSGGTAIHYKCDEENSWYPDIADIESKITSNTRGIVIINPNNPTGSVYPRHVLEQIVALAKKHDLILFADEIYDKIVYDGIEHVAVASLAGDQLCISFNGLSKAYRIAGFRSGWMAITGDKSRAADYIEGLDMLASMRLCANVQAQYAIQTALGGYQSINDLIRPGGRLYEQRNIAWEMLNEIPGVSCVKPEGAMYCFPRLDPNIYPIEDDEKLMLDLLRAEKVLLVQGTGFNWPTPDHFRVVFLPAENELREAIGRLGRFLANRR

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

DCS_A_3(3TCM)
ALA2_HORVU
[Raw transfer]



PLP_B_4(3DYD)
ATTY_HUMAN
[Raw transfer]



PLP_B_5(4CVQ)
ALAA_ECOLI
[Raw transfer]



PLP_B_5(4CVQ)
ALAA_ECOLI
[Raw transfer]



GLU_C_3(1GDE)
?
[Raw transfer]



ASP_C_3(1GCK)
AAT_THET8
[Raw transfer]
36 HHSearch 98.4064%-124 - C1 -4CVQ 4.9 ALAA_ECOLI
1 PsiBlast_PDB 97.9765%-124 - C1 -4CVQ - ALAA_ECOLI -
21 PsiBlast_CBE 97.8265%-124 - C1 -4CVQ 4.9 ALAA_ECOLI
22 PsiBlast_CBE 63.3938% -25 - C1 -1XI9 - ? -
24 PsiBlast_CBE 63.3738% -24 - C1 -1XI9 - ? -
2 PsiBlast_PDB 62.7838% -25 - C1 -1XI9 - ? -
23 PsiBlast_CBE 62.7638% -22 - C1 -1XI9 - ? -
48 HHSearch 54.0525% -36 - C1 -1J32 - ? -
13 PsiBlast_PDB 53.5027% -16 - C1 -1BJW - AAT_THET8 -
10 PsiBlast_PDB 53.3528% -19 - C1 -1B5P - AAT_THET8 -
7 PsiBlast_PDB 53.2228% -20 - C1 -1B5O - AAT_THET8 -
19 PsiBlast_PDB 52.8326% -36 - C1 -1J32 - ? -
9 PsiBlast_PDB 52.6728% -20 - C1 -1GCK 2.7 AAT_THET8
8 PsiBlast_PDB 51.9728% -15 - C1 -1BKG - AAT_THET8 -
35 HHSearch 51.2728% 10 - C1 -3TCM - ALA2_HORVU -
12 PsiBlast_PDB 50.6728% -17 - C1 -1GC4 - AAT_THET8 -
11 PsiBlast_PDB 49.9728% -15 - C1 -1GC3 - AAT_THET8 -
55 HHSearch 48.9029% -8 * C1 *1O4S - AAT_THEMA -
38 HHSearch 47.8026% -21 - C1 -3DYD 5.6 ATTY_HUMAN
6 PsiBlast_PDB 47.7129% -8 - C1 -1O4S - AAT_THEMA -