@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VRF9: (2017-12-02 )
MNQEVKSGKVLSPSTPWTQRPVPGIEVADEQQTLKATFTEPTIECPECHALVTRTAISFNAYVCPQCDEHLRMKARDRLNWFFDNVVAELGQEFSAKDPLKFVDSKPYPDRMREAQTKTGETEALIAMQGNLNGVDMIACAFEFDFMAGSMGTVVGDRFVKAAELAIEKRQPLICFAASGGARMQEGMLSLMQMARTSAAIQKLKDTGLPYIVVLTHPVYGGVTASLAMLGDIHIAEPKAMIGFAGKRVIEQTVRETLEEPFQRAEYLLDHGVVDQIVHRHALRDTVSRLVSKLMNLP

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

YT5_B_5(5KDR)
ACCD_STAA8
[Raw transfer]




191 HHSearch 83.0853% -56 - C3 -2F9Y - ACCD_ECOLI -
1 PsiBlast_PDB 81.7255% -22 - C3 -2F9Y - ACCD_ECOLI -
213 Fugue 80.0341% -36 - C3 -2F9I - ACCD_STAAC -
192 HHSearch 79.5637% -39 - C3 -2F9I - ACCD_STAAC -
2 PsiBlast_PDB 77.9141% -35 - C3 -2F9I - ACCD_STAAC -
3 PsiBlast_PDB 74.3241% -44 - C3 -5KDR 6.8 ACCD_STAA8
212 HHSearch 59.5525%-113 - C3 -4G2R - PCC6_MYCTO -
199 HHSearch 58.1826% -46 - C3 -1ON3 - 12S_PROFR -
198 HHSearch 58.0426% -45 - C3 -1ON3 - 12S_PROFR -
197 HHSearch 57.5924% -51 - C3 -2BZR - PCC5_MYCTU -
206 HHSearch 56.9922% -42 - C3 -5INI - ? -
200 HHSearch 56.4424% -40 - C3 -2A7S - PCC5_MYCTU -
204 HHSearch 56.3325% -44 - C3 -1X0U - ? -
7 PsiBlast_PDB 56.2126% -41 - C3 -1ON9 - 12S_PROFR -
6 PsiBlast_PDB 55.4626% -41 - C3 -1ON3 - 12S_PROFR -
205 HHSearch 54.2722% -43 - C3 -5ING - ? -
214 Fugue 53.7823% -39 - C3 -1ON3 - 12S_PROFR -
211 HHSearch 52.4322% -33 - C3 -3IAV - ? -
203 HHSearch 52.1621% -40 - C3 -3N6R - ? -
209 HHSearch 51.8024% -38 - C3 -1VRG - ? -