@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VS06: (2017-12-05 )
MIQQQVKNEFPTLEDIHAAAERLDGLVVKTPFVFSETISKTLGAEMWLKFENLQFTASFKERGALNKLLSLSEQEKQHGVIAASAGNHAQGVAYHAQRTGVTATIVMPKSTPNVKVQRVREYGARVILHGQDFSEAAAEMHRVAQEESLTIIHPFDDAEIIAGQGTIALEMLEAVPDLDILVVPIGGGGLISGIAIAAKSINPKIKIIGVQSVVYPSMAKLLCNYQLAVSMGSTVAEGIAVKTPGELTTQIAKHFVDDIVVVTEDMIEEAIALLLNIEKTVCEGAGATGIAAIMSRSDLFLGHKVGVVLSGGNIDTRVMVSVLQRHLTRTGRMVRICVELSDNPGALARLTAIIAEQGGNIYELRHERFAATSRAKESAVSVDIELKSAPDLEPLIQAMQLEGYIVRKEEI

Atome Classification :

(23 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PDD_A_3(2ZPU)
SRR_SCHPO
[Raw transfer]




PDD_A_2(2ZR8)
SRR_SCHPO
[Raw transfer]




PLP_A_5(5CVC)
?
[Raw transfer]




PLP_A_9(1VE5)
?
[Raw transfer]




PLP_A_9(1VE5)
?
[Raw transfer]




PLV_J_10(1PWH)
SDHL_RAT
[Raw transfer]




PLV_L_12(1PWH)
SDHL_RAT
[Raw transfer]




PLP_C_11(1VE5)
?
[Raw transfer]




PLP_D_12(1VE5)
?
[Raw transfer]




PLP_C_3(1TDJ)
ILVA_ECOLI
[Raw transfer]




PLP_C_3(1TDJ)
ILVA_ECOLI
[Raw transfer]




54 HHSearch 84.8943% -61 * C2 *2GN0 - TDCB_SALTY -
53 HHSearch 84.6843% -62 - C2 -2GN0 - TDCB_SALTY -
2 PsiBlast_PDB 83.4243% -65 - C2 -2GN1 - TDCB_SALTY -
1 PsiBlast_PDB 83.0443% -65 - C2 -2GN0 - TDCB_SALTY -
3 PsiBlast_PDB 82.0343% -62 - C2 -2GN2 - TDCB_SALTY -
6 PsiBlast_PDB 81.6534% -65 - C2 -5CVC 4.4 ?
49 HHSearch 81.5333% -57 - C2 -1TDJ 3.8 ILVA_ECOLI
55 HHSearch 80.7434% -61 - C2 -5CVC - ? -
50 HHSearch 80.5834% -58 - C2 -2ZPU - SRR_SCHPO -
7 PsiBlast_PDB 80.0635% -58 - C2 -1V71 - SRR_SCHPO -
8 PsiBlast_PDB 78.8935% -58 - C2 -1WTC - SRR_SCHPO -
21 PsiBlast_CBE 77.9534% -59 - C2 -5CVC - ? -
10 PsiBlast_PDB 77.8535% -52 - C2 -2ZR8 7.4 SRR_SCHPO
4 PsiBlast_PDB 77.6534% -60 - C2 -1TDJ 3.8 ILVA_ECOLI
9 PsiBlast_PDB 77.3235% -52 - C2 -2ZPU 5.7 SRR_SCHPO
52 HHSearch 76.0036% -59 - C2 -3IAU - THD1_SOLLC -
51 HHSearch 75.8836% -59 - C2 -3IAU - THD1_SOLLC -
57 HHSearch 75.2027% -73 - C2 -2RKB - SDSL_HUMAN -
58 HHSearch 74.9533% -45 - C2 -3L6B - SRR_HUMAN -
63 HHSearch 72.9238% -27 - C2 -1VE5 4.4 ?
12 PsiBlast_PDB 72.0138% -29 - C2 -1VE5 4.4 ?
22 PsiBlast_CBE 64.3838% -29 - C2 -1VE5 4.2 ?
23 PsiBlast_CBE 63.4338% -24 - C2 -1VE5 4.4 ?