@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VSD6: (2017-12-07 )
MSHQSDLISQDILAYLKQHEQKDLLRFLTCGNVDDGKSTLIGRLLYDSKLIYEDQLQAVTRDSKKVGTTGDAPDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTADLAIILIDARYGVQTQTRRHTFIASLLGIKNIVVAINKMDLVEYSSERFNEIQVEYDAFVSQLGDRRPANILFVPISALNGDNVVNPSAHTPWYKGQTLMSILESVEINRESSKHEFRFPVQYVNRPNLDFRGFAGTVALGEIKVGDEIVALPSGKRSTVKEIVTFDGNLEQAVAGQAVTLTLNDEIDISRGNVLVRAGEQPLISRSVRASVVWMNEHPLVKGKLYNIKIGTQTVPAKVTNINYRVNVNTLEHTQVEELELNAIADVVVEFDAPVVFDRYQDSRYTGSFIFIDRLSNVTVGAGMVEAAVELTAHSNPVTAEDRAARLGQKPAVIGVSAQLIEKSQALESLLIKQGVVAIAKTSLTAEQLVLLRETGVVIITTSVDGTDTEITAETVEEAVEKIVGLVRL

Atome Classification :

(21 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GTP_A_3(3VMF)
EF1A_AERPE
[Raw transfer]



GNP_A_2(2C78)
EFTU1_THET8
[Raw transfer]



GDP_A_2(3WYA)
EF1A_PYRHO
[Raw transfer]



GDP_B_6(3WY9)
EF1A_PYRHO
[Raw transfer]



GDP_A_5(3WY9)
EF1A_PYRHO
[Raw transfer]



GDP_A_5(3WY9)
EF1A_PYRHO
[Raw transfer]



GNP_A_2(4ZU9)
?
[Raw transfer]



5GP_C_3(1G7C)
EF1A_YEAST
[Raw transfer]



GDP_A_4(1IJF)
EF1A_YEAST
[Raw transfer]



G25_C_3(1IJE)
EF1A_YEAST
[Raw transfer]



TAC_B_8(2HCJ)
EFTU1_ECOUT
[Raw transfer]
61 HHSearch 81.2333% -49 - C4 -3WY9 7.6 EF1A_PYRHO
26 PsiBlast_CBE 79.9332% -54 - C4 -3WY9 7.6 EF1A_PYRHO
7 PsiBlast_PDB 79.9132% -54 - C4 -3WY9 7.6 EF1A_PYRHO
23 PsiBlast_CBE 77.7032% -11 - C4 -3WXM - EF1A_AERPE -
5 PsiBlast_PDB 77.4332% -13 - C4 -4CXH - EF1A_AERPE -
4 PsiBlast_PDB 77.4132% -13 - C4 -4CXG - EF1A_AERPE -
3 PsiBlast_PDB 77.1132% -13 - C4 -3VMF 6.9 EF1A_AERPE
6 PsiBlast_PDB 76.7932% -12 - C4 -3WXM - EF1A_AERPE -
25 PsiBlast_CBE 76.6732% -13 - C4 -3WXM - EF1A_AERPE -
24 PsiBlast_CBE 76.3332% -11 - C4 -3WXM - EF1A_AERPE -
8 PsiBlast_PDB 75.9532% -57 - C4 -3WYA 8.0 EF1A_PYRHO
58 HHSearch 73.3730% -1 - C4 -1F60 - EF1A_YEAST -
65 HHSearch 72.9228% -13 - C4 -3P27 - HBS1_YEAST -
44 Fugue 72.8830% -3 - C4 -1F60 - EF1A_YEAST -
2 PsiBlast_PDB 72.6632% 0 - C4 -1SKQ - EF1A_SULSO -
59 HHSearch 72.6332% 8 - C4 -1JNY - EF1A_SULSO -
21 PsiBlast_CBE 72.1132% -0 - C4 -1SKQ - EF1A_SULSO -
60 HHSearch 71.8729% -5 - C4 -4C0S - EF1A2_RABIT -
1 PsiBlast_PDB 71.5332% 2 - C4 -1JNY - EF1A_SULSO -
15 PsiBlast_PDB 69.7428% -3 - C4 -4C0S - EF1A2_RABIT -
12 PsiBlast_PDB 64.4433% -11 - C4 -1IJF 4.9 EF1A_YEAST