@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VSL4: (2017-12-09 )
MSNVDQRPIILTGDRPTGQLHLGHFVGSLRSRVGLQDSHHQHLLLADAQALTDNADNPDKVRRNILEVALDYLAVGIDPTKTTICVQSCLPALNELTMLYLNFVTVARLERNPTIKSEIQMRGFERDIPAGFLCYPVAQAADITAFKATVVPVGEDQIPMIEQTNEIVRRVNRQIGQDLLPECKALLSNMARLPGFDGKAKMSKSLGNTIVLNASDKDIKKAVNAMYTDPNHLRIEDPGQVEGNIVFTYLDAFDPNKEEVEELKAHYRRGGLGDGTVKKRLEGVLKELITPMRERREELAKDPDYIMDVLRQGTDKCRIITQQTLDEVKDGLGLFKF

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

TRP_E_5(2A4M)
SYW2_DEIRA
[Raw transfer]




TRP_E_5(1YI8)
SYW2_DEIRA
[Raw transfer]




HRP_E_5(1YIA)
SYW2_DEIRA
[Raw transfer]




TRP_A_3(2G36)
SYW_THEMA
[Raw transfer]




ATP_B_5(1YID)
SYW2_DEIRA
[Raw transfer]




TRP_A_3(2G36)
SYW_THEMA
[Raw transfer]




GOL_A_3(3N9I)
SYW_YERPE
[Raw transfer]




LTN_A_5(1MAU)
SYW_GEOSE
[Raw transfer]




ADP_B_9(3TZL)
SYW_CAMJE
[Raw transfer]




AMP_B_7(5V0I)
SYW_ECOLI
[Raw transfer]




ANL_A_4(2OV4)
SYW_GEOSE
[Raw transfer]




24 HHSearch 98.2657%-106 - C4 -2A4M - SYW2_DEIRA -
1 PsiBlast_PDB 97.7256%-106 - C4 -2A4M - SYW2_DEIRA -
21 PsiBlast_CBE 97.5256%-106 - C4 -2A4M 3.4 SYW2_DEIRA
23 HHSearch 97.4556%-104 - C4 -1YI8 - SYW2_DEIRA -
2 PsiBlast_PDB 96.5556%-107 - C4 -1YI8 - SYW2_DEIRA -
22 PsiBlast_CBE 96.3556%-110 - C4 -1YI8 2.7 SYW2_DEIRA
3 PsiBlast_PDB 96.2956%-108 - C4 -1YIA 3.1 SYW2_DEIRA
4 PsiBlast_PDB 96.2756%-105 - C4 -1YID 4.7 SYW2_DEIRA
26 HHSearch 81.8141% -11 - C4 -2G36 3.4 SYW_THEMA
6 PsiBlast_PDB 81.2641% -18 - C4 -2G36 3.4 SYW_THEMA
25 HHSearch 79.4241% -26 - C4 -2EL7 - ? -
5 PsiBlast_PDB 79.3740% -25 - C4 -2EL7 - ? -
36 HHSearch 78.3932% -59 - C4 -3TZL 5.5 SYW_CAMJE
7 PsiBlast_PDB 77.2032% -52 - C4 -3M5W - SYW_CAMJE -
8 PsiBlast_PDB 76.8132% -47 - C4 -3TZL - SYW_CAMJE -
37 HHSearch 76.7732% -55 - C4 -3TZL - SYW_CAMJE -
15 PsiBlast_PDB 76.4830% -44 - C4 -1MB2 - SYW_GEOSE -
13 PsiBlast_PDB 75.7530% -42 - C4 -1MAU 3.6 SYW_GEOSE
16 PsiBlast_PDB 75.4930% -37 - C4 -2OV4 2.5 SYW_GEOSE
35 HHSearch 75.4030% -12 * C4 *1I6L - SYW_GEOSE -