@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VT24: (2017-12-11 )
MGSSRGATGMSLSYQPTCSIDALKARAKLYTQIRQFFAERGVMEVETPVVSQAGVTDVHLASVQALRHINGKLQTQYLQTSPEFAMKRLLASGSGPIYQICKVFRDDEHGRKHNSEFTMLEWYRPGLDLKALMHETADLLQTCLQHRFGEVRPFILSYKHAFQDRLDINPLQATLKQLKDTANRVGLNLDLGDDRLAYMDLLFSHFFEPSLGFDAPVFLTDFPPEMASLAKVKLDEDGEEVAARFEVYIEGLELANAYDELLDSDVLRSRFEADNAERAKQGLHVMPLDEHLLAALPHMPECSGIALGVDRLLMVATDQLKIEKVIAFPAEIA

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

KAA_C_7(3A5Y)
EPMA_ECOLI
[Raw transfer]




KAA_C_7(3A5Y)
EPMA_ECOLI
[Raw transfer]




KAA_A_5(3A5Y)
EPMA_ECOLI
[Raw transfer]




KAA_B_6(3A5Y)
EPMA_ECOLI
[Raw transfer]




LAD_A_2(4UP7)
?
[Raw transfer]




AMP_B_7(3G1Z)
EPMA_SALTY
[Raw transfer]




AMP_A_3(3G1Z)
EPMA_SALTY
[Raw transfer]




GOL_B_15(1E1O)
SYK2_ECOLI
[Raw transfer]




LYS_C_3(1BBU)
SYK1_ECOLI
[Raw transfer]




LYS_A_3(4EX5)
SYK_BURTA
[Raw transfer]




47 HHSearch 82.0247% 1 - C8 -3A5Z - EPMA_ECOLI -
24 PsiBlast_CBE 81.4246% 9 - C8 -3A5Z - EPMA_ECOLI -
26 PsiBlast_CBE 81.3046% 11 - C8 -3A5Z - EPMA_ECOLI -
55 HHSearch 81.2047% -3 - C8 -3A5Y 8.7 EPMA_ECOLI
25 PsiBlast_CBE 80.9446% 9 - C8 -3A5Z - EPMA_ECOLI -
3 PsiBlast_PDB 80.6946% 9 - C8 -3A5Z - EPMA_ECOLI -
23 PsiBlast_CBE 80.4446% -5 - C8 -3A5Y 9.5 EPMA_ECOLI
22 PsiBlast_CBE 80.3346% -6 - C8 -3A5Y 8.7 EPMA_ECOLI
21 PsiBlast_CBE 79.9347% -3 - C8 -3G1Z 6.4 EPMA_SALTY
1 PsiBlast_PDB 79.1847% 6 - C8 -3G1Z 6.7 EPMA_SALTY
2 PsiBlast_PDB 76.3446% -7 - C8 -3A5Y 8.9 EPMA_ECOLI
11 PsiBlast_PDB 69.5629% -3 - C8 -5ELN - ? -
12 PsiBlast_PDB 69.4129% 0 - C8 -5ELO - ? -
58 Fugue 67.5827% 22 - C8 -1LYL - SYK2_ECOLI -
4 PsiBlast_PDB 67.4229% -3 - C8 -1BBU 3.8 SYK1_ECOLI
37 HHSearch 67.3328% 5 - C8 -5ELN - ? -
19 PsiBlast_PDB 66.9527% -17 - C8 -4PG3 - ? -
36 HHSearch 66.3428% 6 - C8 -5ELO - ? -
41 HHSearch 65.7727% 8 - C8 -4DPG - SYK_HUMAN -
50 HHSearch 65.7528% 20 - C8 -4UP7 6.8 ?