@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VT37: (2017-12-11 )
MKALVAVKRVVDANVKVRVKPDNSGVDLTNVKMSINPFCEIAVEEAVRLKEKGTVSEIVVVSIGPKEAQEQIRSAMALGADRGILVETTDEIGALEVAKILKGVVDAEKPELILLGKQAIDDDSNQVGQMLGALLGAGQGTFASEVKVDGGKVQVTREIDGGLQTVELALPAIITTDLRLNEPRYAALPNIMKARKKPLDTKSPADYGVTAGTKLKTIKVEAPAERKAGVQVKSVDELVEKLKNEAKVI

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

AMP_D_4(1EFV)
ETFB_HUMAN
[Raw transfer]




AMP_D_4(1EFV)
ETFB_HUMAN
[Raw transfer]




AMP_A_6(1EFP)
ETFB_PARDE
[Raw transfer]




AMP_A_6(1EFP)
ETFB_PARDE
[Raw transfer]




AMP_B_4(2A1U)
ETFB_HUMAN
[Raw transfer]




AMP_C_8(1EFP)
ETFB_PARDE
[Raw transfer]




AMP_C_8(1EFP)
ETFB_PARDE
[Raw transfer]




1 PsiBlast_PDB 74.8863% -23 - C2 -1EFP 7.9 ETFB_PARDE
22 Fugue 74.1863% -23 - C2 -1EFP 7.8 ETFB_PARDE
30 HHSearch 72.7258% -11 - C2 -1EFV 8.0 ETFB_HUMAN
17 PsiBlast_CBE 72.7263% -25 - C2 -1EFP 7.7 ETFB_PARDE
2 PsiBlast_PDB 71.8956% -11 - C2 -1EFV 8.0 ETFB_HUMAN
31 HHSearch 71.7163% -21 * C2 *1EFP 7.7 ETFB_PARDE
5 PsiBlast_PDB 70.4556% -14 - C2 -2A1U 8.2 ETFB_HUMAN
4 PsiBlast_PDB 68.5156% -22 - C2 -2A1T - ETFB_HUMAN -
3 PsiBlast_PDB 67.3256% -19 - C2 -1T9G - ETFB_HUMAN -
8 PsiBlast_PDB 56.6833% -4 - C2 -1O96 - ETFB_METME -
12 PsiBlast_PDB 56.3233% -17 - C2 -3CLT - ETFB_METME -
19 PsiBlast_CBE 56.2033% -2 - C2 -1O96 - ETFB_METME -
18 PsiBlast_CBE 55.9333% -6 - C2 -1O96 - ETFB_METME -
32 HHSearch 55.8129% -14 - C2 -4L2I - ? -
13 PsiBlast_PDB 55.1333% -16 - C2 -3CLU - ETFB_METME -
34 HHSearch 55.0529% -3 - C2 -1O97 - ETFB_METME -
10 PsiBlast_PDB 55.0333% -15 - C2 -3CLR - ETFB_METME -
11 PsiBlast_PDB 54.6433% -13 - C2 -3CLS - ETFB_METME -
9 PsiBlast_PDB 54.4433% -20 - C2 -1O97 - ETFB_METME -
21 PsiBlast_CBE 54.3633% -7 - C2 -1O94 - ETFB_METME -