@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VTL4: (2017-12-14 )
MWCFKNGQPVETIPLLDRAFHYGDGCFTTIRVFQNKIELKARHWERLKLACQKLSLVADFELIEQSLQRLQNQNLVLNGTLKIVISRGEGDRGYSLPKHAADIYIWFYPKALEQFQPDFIQCGVLNQALGLTMPSLVGLKSLNRLEQVLLKKEADQQGWVEALVTDVQGYIVEGVSSNCFIRLNDRWITPELRYNGVHGVMRAEILVRMQHYGIACEVRIIELDEVPQIQSLFFCNALHPMRVVTQISEQILESQACLNLFHTLNLNQIH

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

DCS_C_3(1I2L)
PABC_ECOLI
[Raw transfer]




DCS_C_3(1I2L)
PABC_ECOLI
[Raw transfer]




PLP_B_15(2Y4R)
?
[Raw transfer]




PLP_A_3(2Y4R)
?
[Raw transfer]




PLP_A_3(2Y4R)
?
[Raw transfer]




PLP_A_2(1I2K)
PABC_ECOLI
[Raw transfer]




PLP_A_2(1I2K)
PABC_ECOLI
[Raw transfer]




PLP_A_2(1ET0)
PABC_ECOLI
[Raw transfer]




GOL_A_13(2Y4R)
?
[Raw transfer]




GOL_B_22(2Y4R)
?
[Raw transfer]




24 HHSearch 80.8332% -57 - C4 -2Y4R 3.8 ?
21 PsiBlast_CBE 77.4433% -57 - C4 -2Y4R 4.2 ?
4 PsiBlast_PDB 76.7633% -57 - C4 -2Y4R 3.8 ?
23 HHSearch 74.0533% -33 - C4 -1I2L 5.6 PABC_ECOLI
22 HHSearch 72.8833% -31 - C4 -1I2K 4.1 PABC_ECOLI
3 PsiBlast_PDB 69.7437% -23 - C4 -1I2L 5.6 PABC_ECOLI
2 PsiBlast_PDB 69.0737% -18 - C4 -1I2K 4.1 PABC_ECOLI
1 PsiBlast_PDB 65.6437% -24 - C4 -1ET0 3.9 PABC_ECOLI
38 HHSearch 61.2421% - - C- -4TM5 - ? -
35 HHSearch 58.9623% -6 - C4 -3U0G - ? -
30 HHSearch 56.6224% -23 - C4 -5CM0 - ? -
15 PsiBlast_PDB 56.5124% -21 - C4 -1A3G - ILVE_ECOLI -
33 HHSearch 56.4819% -25 - C4 -5CE8 - ? -
27 HHSearch 56.2024% -23 - C4 -5E25 - ? -
43 Fugue 56.0819% 0 - C4 -5DAA - DAAA_BACYM -
28 HHSearch 55.6919% -5 * C4 *1I1L - ILVE_ECOLI -
16 PsiBlast_PDB 54.9724% -19 - C4 -1I1K - ILVE_ECOLI -
20 PsiBlast_PDB 54.8924% -7 - C4 -1IYE - ILVE_ECOLI -
25 HHSearch 54.5620% 13 - C4 -3DAA - DAAA_BACYM -
17 PsiBlast_PDB 54.3224% -11 - C4 -1I1L - ILVE_ECOLI -