@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VTM3: (2017-12-14 )
MDFDFNLILVPVTLILFAVWLLDKLVFKQRANKGRENENFVITWAYDFWPVLAVVLVLRSFTYEPFNIPSDSMVPTLETGDFILVNKFDYGVRLPIVNKKVIDVGEPKRGDVIVFRYPPQPTISYIKRVIGLPGDHIVYDHGQLIINGQKIPKVPTQFSREKDALDTPTSIYHKETIGDHTFTMRELEGVNVARQAPFINYVDNGKYANQDGLYWEVTVPKGHYFAMGDNRDQSADSRFWGFVPEENLTGRAFYVWMHKEPGFHLPSFNRNGKID

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

02U_I_5(3S04)
LEP_ECOLI
[Raw transfer]



ARY_A_3(3IIQ)
LEP_ECOLI
[Raw transfer]
-
ARY_B_12(3IIQ)
LEP_ECOLI
[Raw transfer]
-
ARY_D_4(1T7D)
LEP_ECOLI
[Raw transfer]
-
EDO_A_2(4ME8)
?
[Raw transfer]



1PN_A_8(1B12)
LEP_ECOLI
[Raw transfer]



1PN_A_8(1B12)
LEP_ECOLI
[Raw transfer]



1PN_D_9(1B12)
LEP_ECOLI
[Raw transfer]



PG4_A_3(4NV4)
?
[Raw transfer]
3 PsiBlast_PDB 92.9541% 0 - C- -1KN9 - LEP_ECOLI -
5 PsiBlast_PDB 88.5842% 0 - C- -1B12 - LEP_ECOLI
23 PsiBlast_CBE 81.0842% 0 - C- -1B12 - LEP_ECOLI -
1 PsiBlast_PDB 76.3941% 0 - C- -1T7D - LEP_ECOLI -
2 PsiBlast_PDB 74.7041% 0 - C- -3S04 - LEP_ECOLI -
20 PsiBlast_CBE 72.8941% -20 - C8 -3S04 Error LEP_ECOLI
25 HHSearch 72.4241% -16 - C8 -1B12 4.4 LEP_ECOLI
21 PsiBlast_CBE 72.1241% -20 - C8 -1T7D 7.5 LEP_ECOLI
43 Fugue 71.5944% 9 - C8 -1B12 4.4 LEP_ECOLI
22 PsiBlast_CBE 71.2941% -13 - C8 -3IIQ 7.3 LEP_ECOLI
4 PsiBlast_PDB 70.3141% -38 - C8 -3IIQ 8.7 LEP_ECOLI
24 HHSearch 68.5841% -24 - C8 -1B12 4.6 LEP_ECOLI
28 HHSearch 57.6431% -47 - C8 -4WVI - MALE_ECO57 -
10 PsiBlast_PDB 57.5729% 11 - C8 -4WVG - MALE_ECO57 -
9 PsiBlast_PDB 55.6930% 8 - C8 -4WVJ - MALE_ECO57 -
8 PsiBlast_PDB 55.1630% 8 - C8 -4WVI - MALE_ECO57 -
7 PsiBlast_PDB 54.6430% 10 - C8 -4WVH - MALE_ECOLI -
11 PsiBlast_PDB 53.4130% -51 - C8 -4ME8 - ? -
26 HHSearch 49.8930% -36 - C8 -4ME8 2.1 ?
29 HHSearch 49.4826% -34 - C8 -4K8W - ? -