@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VTM5: (2017-12-14 )
MTKHQFKLSDPRLLSRIGYQFKQPELLQLALTHRSVSHKYNYERLEFLGDSLLGMIIANYLYHAYPHENEGRLTRMRATLVRQEALGKIATDLQLSRCLILSTGELKSGGHHRESILADTVEAIIGAIYLDSSDLNLLKDIVLKWYTPYLDHIEPTDQLKDPKSRLQEYLQARKKPLPVYEVVDIQGDAPHQHFKVECLVDGLSKIHGEGASRRFAEQAAAAEILKLLEQ

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

A_C_12(4M30)
RNC_AQUAE
[Raw transfer]




C_C_9(4M2Z)
RNC_AQUAE
[Raw transfer]




C_D_12(4M2Z)
RNC_AQUAE
[Raw transfer]




A_D_16(4M30)
RNC_AQUAE
[Raw transfer]




5 PsiBlast_PDB 85.2235% -51 - C1 -2NUF - RNC_AQUAE -
10 PsiBlast_PDB 84.7035% -55 - C1 -2EZ6 - RNC_AQUAE -
58 HHSearch 84.6836% -54 - C1 -2NUG - RNC_AQUAE -
6 PsiBlast_PDB 83.6535% -53 - C1 -2NUG - RNC_AQUAE -
2 PsiBlast_PDB 83.5635% -60 - C1 -1YYK - RNC_AQUAE -
22 PsiBlast_CBE 83.5435% -54 - C1 -4M2Z 2.8 RNC_AQUAE
60 HHSearch 83.3435% -55 - C1 -1RC7 - RNC_AQUAE -
9 PsiBlast_PDB 83.2035% -55 - C1 -1YZ9 - RNC_AQUAE -
23 PsiBlast_CBE 83.0835% -47 - C1 -2NUG - RNC_AQUAE -
7 PsiBlast_PDB 83.0635% -42 - C1 -4M2Z 2.7 RNC_AQUAE
12 PsiBlast_PDB 83.0035% -48 - C1 -1RC7 - RNC_AQUAE -
21 PsiBlast_CBE 82.9135% -44 - C1 -4M30 3.1 RNC_AQUAE
8 PsiBlast_PDB 82.5535% -44 - C1 -4M30 3.2 RNC_AQUAE
4 PsiBlast_PDB 82.0135% -44 - C1 -2NUE - RNC_AQUAE -
26 PsiBlast_CBE 81.6035% -52 - C1 -1YYK - RNC_AQUAE -
11 PsiBlast_PDB 81.2735% -55 - C1 -1YYO - RNC_AQUAE -
29 PsiBlast_CBE 80.9535% -48 - C1 -1YYO - RNC_AQUAE -
3 PsiBlast_PDB 80.2535% -47 - C1 -1YYW - RNC_AQUAE -
25 PsiBlast_CBE 78.9635% -44 - C1 -1YYW - RNC_AQUAE -
69 HHSearch 75.8937%-167 * C1 *3O2R - RNC_CAMJE -