@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VTW6: (2017-12-15 )
MAIPQHTIDQILDRTDIVDLIGQRVKLKKTGRTYSGCCPFHQEKTPSFHVYRDKQYYHCFGCQANGNAIRFLMDIDNRNFIDVMKELSSNTGVELPKDNTDNKKLSYTRQVTKPSTPPKMVAEPTTQAPIEDQYNTFDPVYFDDPFAQFEQPFSFDEPVQEGNLYDLLENVAQFYEHQLPTSQKAKNYFKQRGLSDQTIQFWRLGYAPEDWQHLEKAFPYDIEGLKQLGLIRSSDSGRDFDLLRDRVIFPIRDPKGRVVGFGGRALNDEIKPKYINSPDSEVFHKNQLLYGLYEGRKLKANDWLMVEGYMDVIALQQYGITGAVATLGTASNTEHLNILFKQNNRITIAFDGDAAGQKAARRTLEIALPLLNDGRELKFFVLPNDHDPDSLIRREGVENFQKLLQQAPLLSDFVFAHLTGQHDISTPEGKSLVMGELRELTELLPKQGSFRYLLTQSFREKLGLGKRFTPQISHDASLSFNIQTKDEDFAIAILMHHPFLYIHFEGLRAYIPQDELLAKILAILNRIFDELPDDQELATYYVLGACSSYCHEIADIMQRTNIQALTQAPEVADKLAKEYALGLQERYLRQKLKSKISLVESRNLRQQLNELTKQISLRLLS

Atome Classification :

(23 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GTP_A_5(4EDK)
DNAG_STAAU
[Raw transfer]



UTP_A_5(4EDR)
DNAG_STAAU
[Raw transfer]



CTP_A_2(4EE1)
DNAG_STAAU
[Raw transfer]



ATP_A_4(4EDG)
DNAG_STAAU
[Raw transfer]



0O2_A_3(4EDV)
DNAG_STAAU
[Raw transfer]



G4P_A_3(4EDT)
DNAG_STAAU
[Raw transfer]



NACID_C_1(3B39)
DNAG_ECOLI
[Raw transfer]
-
BEN_A_4(4EDR)
DNAG_STAAU
[Raw transfer]



BEN_A_4(4EDK)
DNAG_STAAU
[Raw transfer]
22 HHSearch 79.7534% -5 * C4 *2AU3 - DNAG_AQUAE -
5 PsiBlast_PDB 73.7144% 35 - C4 -5VAZ - DNAG_PSEAE -
4 PsiBlast_PDB 72.5743% 54 - C4 -1EQN - DNAG_ECOLI -
25 HHSearch 72.5244% 39 - C4 -5VAZ - DNAG_PSEAE -
3 PsiBlast_PDB 71.9443% 58 - C4 -3B39 5.4 DNAG_ECOLI
51 Fugue 71.8143% 55 - C4 -1DD9 - DNAG_ECOLI -
21 PsiBlast_CBE 71.6843% 63 - C4 -3B39 - DNAG_ECOLI -
23 HHSearch 71.4643% 56 - C4 -3B39 - DNAG_ECOLI -
6 PsiBlast_PDB 70.3031% 12 - C4 -2AU3 - DNAG_AQUAE -
1 PsiBlast_PDB 69.3443% 55 - C4 -1DD9 - DNAG_ECOLI -
24 HHSearch 69.1643% 54 - C4 -1DD9 - DNAG_ECOLI -
2 PsiBlast_PDB 69.1243% 54 - C4 -1DDE - DNAG_ECOLI -
26 HHSearch 62.2427% 29 - C4 -5GUJ - DNAG_BACSU -
27 HHSearch 60.7328% 37 - C4 -4EDK - DNAG_STAAU -
52 Fugue 59.2227% 37 - C4 -4EDK - DNAG_STAAU -
15 PsiBlast_PDB 55.8354%-194 - C4 -1D0Q - DNAG_GEOSE -
13 PsiBlast_PDB 55.5834% 50 - C4 -4EE1 6.2 DNAG_STAAU
12 PsiBlast_PDB 55.5834% 50 - C4 -4EDV 4.4 DNAG_STAAU
31 HHSearch 55.4353%-189 - C4 -1D0Q - DNAG_GEOSE -
10 PsiBlast_PDB 55.2434% 49 - C4 -4EDR 6.8 DNAG_STAAU
9 PsiBlast_PDB 54.8334% 50 - C4 -4EDK 7.0 DNAG_STAAU
11 PsiBlast_PDB 54.5734% 50 - C4 -4EDT 4.7 DNAG_STAAU
8 PsiBlast_PDB 54.5634% 51 - C4 -4EDG 6.7 DNAG_STAAU