@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VV41: (2017-12-22 )
MYQINALNPKDEGHKARKRFGQNFLHDQRVIAKIVRSVNPRTGDNIVEIGPGLAALTSPLIGECDALTVVELDRDLAAGLPERVPHPERLTIVEADALKYDFSQLVKDGRPLRVVGNLPYNISTPLLFHLLEFGSQVKDMHFMLQKEVVERITAEPNTKEYGRLSVMIQYYCQPTFLFEVPAGAFNPPPKVTSAVFRLVPYEQKPITAKDEKALARLVAHVFTQRRKTLRNSLKGMLAEDGFEKAGVDPMARPETLTLAEFVALADQMVA

Atome Classification :

(21 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NACID_D_3(3FTF)
RSMA_AQUAE
[Raw transfer]

-

AMP_A_2(3GRU)
RSMA_METJA
[Raw transfer]




MTA_C_6(3FUX)
RSMA_THET8
[Raw transfer]




39 HHSearch 91.0152% -73 - C1 -1QYR - RSMA_ECOLI -
3 PsiBlast_PDB 89.4952% -73 - C1 -4ADV - RSMA_ECOLI -
2 PsiBlast_PDB 89.0652% -73 - C1 -1QYR - RSMA_ECOLI -
1 PsiBlast_PDB 88.8553% -75 - C1 -3TPZ - RSMA_ECOLI -
45 HHSearch 83.6338%-111 - C1 -3FUX 7.3 RSMA_THET8
46 HHSearch 81.3838%-109 - C- -3FUT - RSMA_THET8 -
47 HHSearch 77.7430%-116 - C1 -3FYC - RSMA_METJA -
5 PsiBlast_PDB 77.2347% 8 - C1 -3UZU - RSMA_BURPS -
40 HHSearch 76.9630%-118 - C1 -3GRU 5.5 RSMA_METJA
34 HHSearch 75.9048% 14 - C1 -3UZU - RSMA_BURPS -
38 HHSearch 73.0135% -11 - C1 -4GC5 - TFB1M_MOUSE -
49 HHSearch 72.8523%-135 - C1 -1QAO - ERM_BACIU -
50 HHSearch 72.3623%-138 - C1 -1QAM - ERM_BACIU -
35 HHSearch 71.5936% -35 - C1 -4JXJ - RSMA_RICBR -
9 PsiBlast_PDB 71.5338% -25 - C1 -3FUX - RSMA_THET8 -
22 PsiBlast_CBE 70.7738% -24 - C1 -3FUX - RSMA_THET8 -
16 PsiBlast_PDB 70.3933% -10 - C1 -4GC5 - TFB1M_MOUSE -
23 PsiBlast_CBE 69.8338% -24 - C1 -3FUX - RSMA_THET8 -
7 PsiBlast_PDB 69.5238% -23 - C1 -3FUU - RSMA_THET8 -
6 PsiBlast_PDB 69.4137% -29 - C1 -4JXJ - RSMA_RICBR -
14 PsiBlast_PDB 67.3535% -18 - C1 -3FTF 3.6 RSMA_AQUAE