@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VV81: (2017-12-22 )
MNLTELKKKPIGELIKIAEFMGLEGMARNRKQDIIFAILKRHAMNGEEIFGDGVLEILSDGFGFLRSAAGSYLAGPDDIYVSPSQIRRFNLRTGDTITGTIRPPKEGERYFALLKVNQINYDTPENSRNKILFENLTPLFPTEQLVMELGNGTTEDLTARVVDLVAPIGKGQRSIIVAPPKAGKTMLLQNIAQSIVRNNPEVFLIVLLIDERPEEVTEMERTVRGEVVASTFDEAPARHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALERPKRFFGAARNIEEGGSLTIISTALIETGSKMDDVIYEEFKGTGNQEITLDRRIAEKRVFPAMNIKKSGTRREERLMDEDKLRKVWILRKLLHPMDELAAMEFLLDRMKETKTNDDFFDQMKRKAST

Atome Classification :

(28 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NACID_D_1(2A8V)
RHO_ECOLI
[Raw transfer]
-
NACID_D_1(2A8V)
RHO_ECOLI
[Raw transfer]
-
NACID_E_2(2A8V)
RHO_ECOLI
[Raw transfer]
-
NACID_H_2(1PVO)
RHO_ECOLI
[Raw transfer]
-
NACID_G_1(1PVO)
RHO_ECOLI
[Raw transfer]
-
NACID_K_4(1PVO)
RHO_ECOLI
[Raw transfer]
-
NACID_L_5(1PVO)
RHO_ECOLI
[Raw transfer]
-
NACID_J_1(2HT1)
RHO_ECOLI
[Raw transfer]
-
NACID_J_3(1PVO)
RHO_ECOLI
[Raw transfer]
-
NACID_K_4(2HT1)
RHO_ECOLI
[Raw transfer]
-
35 PsiBlast_CBE 100.0077% 0 - C- -1XPO - RHO_ECOLI -
34 PsiBlast_CBE 100.0077% 0 - C- -1XPO - RHO_ECOLI -
33 PsiBlast_CBE 100.0077% 0 - C- -1XPO - RHO_ECOLI -
31 PsiBlast_CBE 100.0077% 0 - C- -1XPO - RHO_ECOLI -
30 PsiBlast_CBE 100.0077% 0 - C- -1XPR - RHO_ECOLI -
29 PsiBlast_CBE 100.0077% 0 - C- -1XPR - RHO_ECOLI -
28 PsiBlast_CBE 100.0077% 0 - C- -1XPR - RHO_ECOLI -
26 PsiBlast_CBE 100.0077% 0 - C- -1XPR - RHO_ECOLI -
25 PsiBlast_CBE 100.0077% 0 - C- -1XPU - RHO_ECOLI -
24 PsiBlast_CBE 100.0077% 0 - C- -1XPU - RHO_ECOLI -
23 PsiBlast_CBE 100.0077% 0 - C- -1XPU - RHO_ECOLI -
21 PsiBlast_CBE 100.0077% 0 - C- -1XPU - RHO_ECOLI -
4 PsiBlast_PDB 100.0077% 0 - C- -1XPO - RHO_ECOLI -
3 PsiBlast_PDB 100.0077% 0 - C- -1XPU - RHO_ECOLI -
2 PsiBlast_PDB 100.0077% 0 - C- -1XPR - RHO_ECOLI -
32 PsiBlast_CBE 99.7577% 0 - C- -1XPO - RHO_ECOLI -
27 PsiBlast_CBE 99.7577% 0 - C- -1XPR - RHO_ECOLI -
22 PsiBlast_CBE 99.7577% 0 - C- -1XPU - RHO_ECOLI -
38 PsiBlast_CBE 89.3077% -91 - C4 -1PVO 6.2 RHO_ECOLI
1 PsiBlast_PDB 89.1377% -96 - C4 -1PVO 6.1 RHO_ECOLI
36 PsiBlast_CBE 88.3277% -90 - C4 -1PVO 7.1 RHO_ECOLI
39 PsiBlast_CBE 88.1177% -91 - C4 -1PVO 6.5 RHO_ECOLI
37 PsiBlast_CBE 87.5977% -88 - C4 -1PVO 6.3 RHO_ECOLI
41 PsiBlast_CBE 74.5777% -87 - C4 -2HT1 5.1 RHO_ECOLI
5 PsiBlast_PDB 73.5777% -89 - C4 -2HT1 4.4 RHO_ECOLI
49 PsiBlast_CBE 52.3982%-129 - C4 -2A8V 5.1 RHO_ECOLI
10 PsiBlast_PDB 52.2582%-130 - C4 -2A8V 5.6 RHO_ECOLI
53 HHSearch 51.6583%-134 - C4 -2A8V 5.6 RHO_ECOLI