@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : I3U009: (2017-12-17 )
MSDYLTMAELENKTLKEVYSYAKEFKIPYYSKMNKKELSLAVIRAQAEKQGFYYMEGILDIVGQDGYGFLRPINYGPSAEDIYISASQIRRFSLRNGDKVAGKARPPKESERYYGLMHVESVNGKDPEEAKERPHFPALTPLYPQRQLQLETTPQRLSTRMIDIFSPIGFGQRGLIVAPPKAGKTSVLKEIANGITENYPEVELIVLLIDERPEEVTDLERSVKGDVVSSTFDLQPQNHTRVSELVLERAMRLVEDKRDVVILMDSITRLARAYNLVVPPSGRTLSGGIDPAALYKPKKFFGAARNIEEGGSLTILATALVDTGSRMDDVIYEEFKGTGNLELQLSRELSERRIFPAIDIKKSGTRKEELLMPSEELEEIWKLRKNMTGDSLEYTEQLIRFLRKTKNNQQFFKEFQDVSFGKKNPTRNLKR

Atome Classification :

(23 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NACID_G_7(5JJK)
RHO_ECOLI
[Raw transfer]
-
NACID_G_7(5JJK)
RHO_ECOLI
[Raw transfer]
-
NACID_G_7(5JJK)
RHO_ECOLI
[Raw transfer]
-
NACID_G_7(3ICE)
RHO_ECOLI
[Raw transfer]
-
36 PsiBlast_CBE 98.4152% 0 - C- -1XPO - RHO_ECOLI -
35 PsiBlast_CBE 98.4152% 0 - C- -1XPO - RHO_ECOLI -
34 PsiBlast_CBE 98.4152% 0 - C- -1XPO - RHO_ECOLI -
32 PsiBlast_CBE 98.4152% 0 - C- -1XPO - RHO_ECOLI -
31 PsiBlast_CBE 98.4152% 0 - C- -1XPR - RHO_ECOLI -
30 PsiBlast_CBE 98.4152% 0 - C- -1XPR - RHO_ECOLI -
29 PsiBlast_CBE 98.4152% 0 - C- -1XPR - RHO_ECOLI -
27 PsiBlast_CBE 98.4152% 0 - C- -1XPR - RHO_ECOLI -
26 PsiBlast_CBE 98.4152% 0 - C- -1XPU - RHO_ECOLI -
25 PsiBlast_CBE 98.4152% 0 - C- -1XPU - RHO_ECOLI -
24 PsiBlast_CBE 98.4152% 0 - C- -1XPU - RHO_ECOLI -
22 PsiBlast_CBE 98.4152% 0 - C- -1XPU - RHO_ECOLI -
4 PsiBlast_PDB 98.4152% 0 - C- -1XPO - RHO_ECOLI -
3 PsiBlast_PDB 98.4152% 0 - C- -1XPU - RHO_ECOLI -
2 PsiBlast_PDB 98.4152% 0 - C- -1XPR - RHO_ECOLI -
33 PsiBlast_CBE 98.1552% 0 - C- -1XPO - RHO_ECOLI -
28 PsiBlast_CBE 98.1552% 0 - C- -1XPR - RHO_ECOLI -
23 PsiBlast_CBE 98.1552% 0 - C- -1XPU - RHO_ECOLI -
39 PsiBlast_CBE 82.6852% 19 - C6 -1PVO - RHO_ECOLI -
1 PsiBlast_PDB 82.4152% 21 - C6 -1PVO - RHO_ECOLI -
47 PsiBlast_CBE 62.3455% 36 - C6 -5JJK Error RHO_ECOLI
46 PsiBlast_CBE 55.4455% 67 - C6 -5JJK Error RHO_ECOLI
48 PsiBlast_CBE 55.2555% 72 - C6 -5JJK 3.0 RHO_ECOLI