@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : I3U1G7: (2017-12-20 )
MPCHKEPIKKELVTLNYRNDIRNVAIIAHVDHGKTTLVDELLKQSDTLDAHTQLQERAMDSNALEKERGITILAKNTAVDYKGIRVNIMDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQHITPIVVVNKIDKPSARPEHVVDEVLELFIELGADDDQLDFPVIYASALNGTSSLSDDPADQEPTMAPIFDTIIEKIPAPVDNSDEPLQFQVSLLDYNDYVGRIGIGRVFRGTIKVGDQVALIKLDGTVKKFRVTKLFGFFGLKRLEIQEAKAGDLIAVSGMEDIFVGETVTPVDHQDALPILHIDEPTLQMTFLVNNSPFAGREGKFVTARKIEERLMAELQTDVSLRVEPTNSPDAWTVSGRGELHLSILIENMRREGYELQVSRPEVIEKEIDGVKCEPFERVQIDTPEEYMGSVIESLSLRKGEMQDMVHTGNGQIRLTFLTPARGLIGYSTEFLSMTRGYGIMNHTFDQYLPMLPGQIGGRHQGALVSIDTGKATTYSIMSIEERGTVFVEPGTEVYEGMIIGENSRDNDLTVNITKAKQMTNVRSATKDQTSVIKKPKQLTLEESLEFLNDDEYCEVTPESIRLRKQILEKNAREKASKKKK

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

G4P_A_5(4ZCM)
TYPA_ECOLI
[Raw transfer]



GDP_B_9(4ZCL)
TYPA_ECOLI
[Raw transfer]



GDP_A_5(4ZCL)
TYPA_ECOLI
[Raw transfer]



G4P_B_9(4ZCM)
TYPA_ECOLI
[Raw transfer]
4 PsiBlast_PDB 87.6753% -81 - C1 -4ZCI - TYPA_ECOLI -
119 HHSearch 87.0953% -81 - C1 -4ZCI - TYPA_ECOLI -
23 PsiBlast_CBE 86.5753% -83 - C1 -4ZCI - TYPA_ECOLI -
5 PsiBlast_PDB 86.1953% -81 - C1 -4ZCL 6.0 TYPA_ECOLI
22 PsiBlast_CBE 86.0453% -79 - C1 -4ZCL 5.0 TYPA_ECOLI
1 PsiBlast_PDB 85.3653% -79 - C1 -4ZCM 4.2 TYPA_ECOLI
21 PsiBlast_CBE 84.9653% -78 - C1 -4ZCM 4.6 TYPA_ECOLI
2 PsiBlast_PDB 78.0053% -68 - C5 -5A9W - TYPA_ECOLI -
3 PsiBlast_PDB 77.2753% -62 - C5 -5A9X - TYPA_ECOLI -
134 HHSearch 63.3033% - - C1 -1ZN0 - EFG_THET8 -
128 HHSearch 62.7433% 3 - C1 -2BM0 - ? -
132 HHSearch 58.0031% 10 - C1 -2XEX - EFG_STAAU -
129 HHSearch 57.6231% 26 - C1 -3J0E - EFG_ECOLI -
135 HHSearch 55.5525% 4 - C1 -5MQF - U5S1_HUMAN -
139 HHSearch 55.1720% -5 - C1 -5GMK - SN114_YEAST -
140 HHSearch 54.9923% 1 - C1 -3JB9 - SN114_SCHPO -
131 HHSearch 53.8125% 23 - C1 -2DY1 - ? -
126 HHSearch 52.5128% 22 - C1 -3DEG - LEPA_ECOLI -
138 HHSearch 52.4420% -7 - C1 -5LJ3 - SN114_YEAST -
149 HHSearch 51.9733% -23 * C1 *5VH6 - EFG_BACSU -