@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : I3U1M0: (2017-12-20 )
MLRLTNRKEVSFLKNIILTGDRPTGKLHLGHYVGSLKTRVAMQADEDNQLFVMIADMQALTDNAKNPEKVSSNVLQVALDYLAVGLDPAKSTLFIQSQIPELAELTMYYLNLVSVGRVRRNPTVKTEIEQKKFGESVPTGFFIYPVSQAADITAFKANLVPVGEDQKPMLEQTQEIVQSFNHTYGEVLVEPKGVFPPKGMGRLPGIDGNGKMSKSLGNGIYISDPADVLQKKVMSMYTDPNHIHVQDPGQVEGNMVFTYLDVFGTDKEAIEEMKAHYRRGGLGDVKIKRYLIDVLEAEFAPIRARREELEKDPSAVMEILRKGSEEAAKVAAQTLSEVKSAMGINYFH

Atome Classification :

(22 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

TRP_E_5(2A4M)
SYW2_DEIRA
[Raw transfer]




HRP_E_5(1YIA)
SYW2_DEIRA
[Raw transfer]




TRP_E_5(1YI8)
SYW2_DEIRA
[Raw transfer]




LTN_A_5(1MAU)
SYW_GEOSE
[Raw transfer]




GOL_A_3(3N9I)
SYW_YERPE
[Raw transfer]




ATP_B_5(1YID)
SYW2_DEIRA
[Raw transfer]




TRP_A_3(2G36)
SYW_THEMA
[Raw transfer]




TRP_A_3(2G36)
SYW_THEMA
[Raw transfer]




TRP_B_10(3TZL)
SYW_CAMJE
[Raw transfer]




TRP_A_2(3SZ3)
SYW_VIBCH
[Raw transfer]




ANL_A_4(2OV4)
SYW_GEOSE
[Raw transfer]




AMP_B_7(5V0I)
SYW_ECOLI
[Raw transfer]




AMP_A_3(5V0I)
SYW_ECOLI
[Raw transfer]




21 PsiBlast_CBE 90.0059%-103 - C2 -2A4M 2.8 SYW2_DEIRA
47 HHSearch 89.9458% -97 - C2 -1YI8 - SYW2_DEIRA -
48 HHSearch 89.6959% -98 - C2 -2A4M - SYW2_DEIRA -
22 PsiBlast_CBE 89.2059%-103 - C2 -1YI8 2.7 SYW2_DEIRA
2 PsiBlast_PDB 88.4659%-100 - C2 -1YI8 - SYW2_DEIRA -
1 PsiBlast_PDB 88.3859%-100 - C2 -2A4M - SYW2_DEIRA -
4 PsiBlast_PDB 87.8259% -99 - C2 -1YID 4.7 SYW2_DEIRA
3 PsiBlast_PDB 87.6759%-103 - C2 -1YIA 2.9 SYW2_DEIRA
6 PsiBlast_PDB 80.3537%-116 - C2 -2G36 3.4 SYW_THEMA
50 HHSearch 80.2438%-112 - C2 -2G36 3.4 SYW_THEMA
57 HHSearch 76.9033%-116 - C2 -3TZL 4.3 SYW_CAMJE
56 HHSearch 74.8733%-113 - C2 -3TZL - SYW_CAMJE -
7 PsiBlast_PDB 74.8432%-124 - C2 -3M5W - SYW_CAMJE -
8 PsiBlast_PDB 74.2432%-113 - C2 -3TZL - SYW_CAMJE -
38 Fugue 68.9330% -60 - C2 -1D2R - SYW_GEOSE -
5 PsiBlast_PDB 68.7240% -23 - C2 -2EL7 - ? -
51 HHSearch 68.6933% -30 - C2 -3PRH - SYW_BACSU -
35 PsiBlast_CBE 68.4932% -37 - C2 -1MAW - SYW_GEOSE -
31 PsiBlast_CBE 68.3432% -31 - C2 -1MAW - SYW_GEOSE -
60 HHSearch 67.8930% -64 - C2 -5V0I 3.5 SYW_ECOLI
16 PsiBlast_PDB 67.4330% -18 - C2 -3N9I 2.9 SYW_YERPE
37 PsiBlast_CBE 64.1831% -23 - C2 -3SZ3 3.8 SYW_VIBCH