@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Q3XY17: (2018-01-07 )
MAQRTIYCGLVSEQQLEQTVTLKGWVQKRRDLGGVIFIDLRDREGIVQIVFNPEINKEAWEIADKCRSEYVIEVTGEVRRRGENAVNPKMATGEFEVIASEIVILNQAKTPPFQIEDDQAISDEIRLKYRYLDLRRPKMTKNIKLRNATTKAIRHYLDDNDFLDIETPYLGKSTPEGARDYLVPSRVHAGHFYALPQSPQLFKQLLMNAGFDRYYQIVRCFRDEDLRGDRQPEFTQVDIETTFLTAEEIQTYTEGLIAKVMKEVRGIEVTLPFPRMTYDEAMARYGSDKPDTRFDMELIDLSDTVKEVEFKVFQMALENGGVVKALNAKGAADRYSRKDMDQLGQYVGQFGAKGLAWLKVEEDGLKGPIAKFMGEATEAIIKATDAKPGDLLMFGADKSEIVAAALGAIRTRLGKELGLIDESKFNFLWVTDWPQFEFSEEEGRYVSAHHPFTMPKEEDIPLLAEDPAKVYAEAYDIVLNGYELGGGSIRIHTRELQEKVLETLGFTKEQMEEQFGFLLTALDYGFPPHGGIALGLDRFAMLLAGEDNIREVIAFPKNGKAADVMSDAPSMVSPLQLFELNIDVTNIEE

Atome Classification :

(23 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

AMO_E_5(1C0A)
SYD_ECOLI
[Raw transfer]




AMO_E_5(1C0A)
SYD_ECOLI
[Raw transfer]




AMO_E_5(1C0A)
SYD_ECOLI
[Raw transfer]




AMO_E_5(1G51)
SYD_THETH
[Raw transfer]




AMO_F_6(1G51)
SYD_THETH
[Raw transfer]




ASP_A_3(5W25)
?
[Raw transfer]




ASP_B_6(4O2D)
SYDND_MYCS2
[Raw transfer]




ASP_A_3(4O2D)
SYDND_MYCS2
[Raw transfer]




ASP_B_7(5W25)
?
[Raw transfer]




ASP_A_3(4WJ4)
SYDND_PSEAE
[Raw transfer]




GOL_B_15(1E1O)
SYK2_ECOLI
[Raw transfer]




ASP_A_3(4WJ4)
SYDND_PSEAE
[Raw transfer]




3SY_A_2(4RMF)
SYDND_MYCS2
[Raw transfer]




3SY_A_2(4RMF)
SYDND_MYCS2
[Raw transfer]




ASP_A_3(3NEL)
SYD_THEKO
[Raw transfer]




41 HHSearch 84.8055% -14 - C7 -1C0A 8.6 SYD_ECOLI
21 PsiBlast_CBE 84.7053% -11 - C7 -1IL2 - SYD_ECOLI -
2 PsiBlast_PDB 84.5753% -11 - C7 -1IL2 - SYD_ECOLI -
43 HHSearch 84.5454% - - C7 -4WJ3 - SYDND_PSEAE -
3 PsiBlast_PDB 84.5353% -11 - C7 -1C0A 8.6 SYD_ECOLI
1 PsiBlast_PDB 84.5353% -13 - C7 -1EQR - SYD_ECOLI -
62 Fugue 84.2754% -11 - C7 -1C0A 8.6 SYD_ECOLI
4 PsiBlast_PDB 84.1653% - - C7 -4WJ3 - SYDND_PSEAE -
42 HHSearch 84.0054% -22 - C7 -4WJ4 2.8 SYDND_PSEAE
5 PsiBlast_PDB 83.4053% -21 - C7 -4WJ4 2.8 SYDND_PSEAE
11 PsiBlast_PDB 80.8947% -38 - C7 -5W25 3.5 ?
9 PsiBlast_PDB 80.8846% -36 - C7 -4O2D 3.6 SYDND_MYCS2
39 HHSearch 80.3947% -36 - C7 -4RMF 3.3 SYDND_MYCS2
7 PsiBlast_PDB 79.6951% 23 - C7 -1G51 7.5 SYD_THETH
10 PsiBlast_PDB 79.4946% -34 - C7 -4RMF 3.3 SYDND_MYCS2
44 HHSearch 79.4253% 23 - C7 -1L0W - -
24 PsiBlast_CBE 79.4051% 25 - C7 -1G51 7.9 SYD_THETH
8 PsiBlast_PDB 79.2451% 26 - C7 -1L0W - SYD_THETH -
6 PsiBlast_PDB 78.7851% 29 - C7 -1EFW - SYD_THETH -
45 HHSearch 78.5953% 26 - C7 -1EFW - SYD_THETH -
26 PsiBlast_CBE 77.3147% -36 - C7 -5W25 4.0 ?
25 PsiBlast_CBE 72.4846% -37 - C7 -4O2D 3.8 SYDND_MYCS2
13 PsiBlast_PDB 47.3735% -6 - C7 -3NEL 3.5 SYD_THEKO