@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Q3XZ63: (2018-01-12 )
MGNKRIYELAKELKKSSKDVVEKAQQLGIDVKNHMGAITSNDEKKLQQAFKNPSTKQQAAQQASRKPANQQPNDQRKKETTNNQQKNKNNRSYQDRGQGSGQVNQGKKPTTNQNNTGNTSSQNRQGTSQGGNQNRTNNNNKPNNNNRGKFNNNNRNRYNKKGKKGKQQQSTKPAVPPRKFRELPDVLEYTEGMNVADIAKKIHREPAEIIKKLFMLGVMVNQNQALDKDTIELLATDYGMEPQEKVQVDIADIDKFFEAEEVDPDKLVSRPPVVTIMGHVDHGKTTLLDTLRHSRVTSGEAGGITQHIGAYQIDIDGKPITFLDTPGHAAFTSMRARGASITDITILVVAADDGVMPQTVEAINHAKAAGVPIIVAVNKIDKPGANPQHVMQELSEYELIPEAWGGETIFVEISAKFGQNIEELLEMILLVAEVEDLKADPTQRAIGTVIEARLDKGKGPVSTLLVQEGTLHVGDPIVVGNTYGRVRVMTNDLGRRDKEAGPATPVEITGLNDVPQAGDRFVVFEDEKTARAAGEERAKRALLENRAATSRVTLDNLFESLKEGELKEVNVIIKADVQGSAEALAASLKKIDVEGVRVKIVHSAVGAINESDVTLAAASNAIIIGFNVRPTPQAKVQADTEEVDIRLHRIIYKAIEEIETAMKGMLDPEFEEKITGQMIVRETFKVSKVGTIAGAYVTEGYIRRDSGVRVIRDGIVIYEGQLASLKRFKDDVKEVKMGYECGAMIEKFNDIKVDDVIEGFIMEEVKND

Atome Classification :

(27 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GDP_A_2(4B47)
IF2_THET8
[Raw transfer]



GTP_A_3(4TMX)
IF2P_CHATD
[Raw transfer]



GDP_A_2(4B44)
IF2_THET8
[Raw transfer]



GTP_A_2(4B48)
IF2_THET8
[Raw transfer]



GNP_A_3(1G7T)
IF2P_METTH
[Raw transfer]



GTP_B_6(4TMW)

[Raw transfer]



GDP_B_2(1G7S)
IF2P_METTH
[Raw transfer]



GDP_A_2(5FG3)
IF2P_AERPE
[Raw transfer]



GDP_A_2(5FG3)
IF2P_AERPE
[Raw transfer]



GOL_A_3(4B3X)
IF2_THET8
[Raw transfer]



GOL_A_3(4B3X)
IF2_THET8
[Raw transfer]
1 PsiBlast_PDB 68.3952% 15 - C3 -5ME0 - IF2_ECOLI -
2 PsiBlast_PDB 68.2752% 15 - C3 -5ME1 - IF2_ECOLI -
132 HHSearch 67.8544% -1 - C2 -3J4J - IF2_THET8 -
142 HHSearch 62.2045% -30 - C2 -4B43 - IF2_THET8 -
4 PsiBlast_PDB 62.0543% 36 - C2 -3J4J - IF2_THET8 -
11 PsiBlast_PDB 60.8475%-142 - C3 -2LKD - -
10 PsiBlast_PDB 60.7075%-143 - C3 -2LKC - -
123 Fugue 60.6543% -19 - C2 -4B3X 3.0 IF2_THET8
138 HHSearch 60.2833% 0 - C- -1G7T - IF2P_METTH -
133 HHSearch 59.7557% -49 - C2 -1ZO1 - IF2_ECOLI -
3 PsiBlast_PDB 59.2856% -49 - C2 -1ZO1 - IF2_ECOLI -
6 PsiBlast_PDB 58.9442% 27 - C3 -4KJZ - IF2_THET8 -
124 Fugue 55.3629% 20 - C2 -1G7S - IF2P_METTH -
21 PsiBlast_CBE 54.3042% 34 - C3 -4KJZ - IF2_THET8 -
141 HHSearch 54.1329% -1 - C2 -4N3S - IF2P_YEAST -
137 HHSearch 53.9033% 24 - C2 -1G7S 5.8 IF2P_METTH
16 PsiBlast_PDB 53.7631% 13 - C2 -5FG3 8.0 IF2P_AERPE
19 PsiBlast_PDB 52.9429% 6 - C2 -1G7R - IF2P_METTH -
13 PsiBlast_PDB 52.1346% 23 - C2 -4B43 - IF2_THET8 -
134 HHSearch 52.0344% 4 - C6 -3IZY - IF2M_BOVIN -
9 PsiBlast_PDB 52.0046% 30 - C2 -4B44 6.9 IF2_THET8
12 PsiBlast_PDB 51.9046% 19 - C2 -4B3X 3.0 IF2_THET8
7 PsiBlast_PDB 51.6346% 32 - C2 -4B47 7.3 IF2_THET8
8 PsiBlast_PDB 50.5646% 30 - C2 -4B48 6.5 IF2_THET8
140 HHSearch 50.3231% 29 - C2 -5FG3 7.9 IF2P_AERPE
150 HHSearch 42.1632% -3 - C2 -4TMW 8.5
149 HHSearch 42.0132% -3 - C2 -4TMX 8.8 IF2P_CHATD