@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Q3Y0H7: (2018-01-20 )
MKDHIIPKATAKRLPLYYRYLRILNNAGKKKVSSTELSEAVQVDSATIRRDFSYFGELGKRGYGYDVEDLMHFFAKTLNDDQLTNVALIGVGNLGSALLKYKFHQSNSIRISCAFDVNEEIVGRIVDGIPVYPMEDMSEQIKIQQIEVAILTIPAERAQEVVNQLTEAGIKGILNFTAARLNAPSDVLIQNVDLTNELQTLIYFLHSDANAHSENTAE

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAD_A_3(2VT2)
REX_BACSU
[Raw transfer]




ATP_A_3(2VT3)
REX_BACSU
[Raw transfer]




ATP_A_3(2VT3)
REX_BACSU
[Raw transfer]




ATP_A_3(2VT3)
REX_BACSU
[Raw transfer]




ATP_B_4(2VT3)
REX_BACSU
[Raw transfer]




ATP_B_4(2VT3)
REX_BACSU
[Raw transfer]




NAD_B_4(2VT2)
REX_BACSU
[Raw transfer]




20 PsiBlast_CBE 91.1159%-172 - C10 -2VT3 5.7 REX_BACSU
21 PsiBlast_CBE 90.6059%-172 - C10 -2VT2 5.8 REX_BACSU
1 PsiBlast_PDB 86.6359%-201 - C10 -2VT2 4.8 REX_BACSU
42 Fugue 86.2758%-204 - C10 -2VT3 5.5 REX_BACSU
4 PsiBlast_PDB 86.1454% -85 - C10 -3KET - REX_STRA3 -
2 PsiBlast_PDB 86.1259%-199 - C10 -2VT3 5.5 REX_BACSU
23 PsiBlast_CBE 85.7954% -88 - C10 -3KEO - REX_STRA3 -
22 PsiBlast_CBE 85.7954% -93 - C10 -3KEQ - REX_STRA3 -
31 PsiBlast_CBE 85.2837%-166 - C10 -3WGG - ? -
55 HHSearch 85.1057%-201 - C10 -2VT3 5.5 REX_BACSU
54 HHSearch 84.8154% -87 - C10 -3KEO - REX_STRA3 -
3 PsiBlast_PDB 84.6154% -96 - C10 -3KEQ - REX_STRA3 -
58 HHSearch 84.4237%-167 - C10 -3WGI - ? -
27 PsiBlast_CBE 84.2237%-167 - C10 -3WGI - ? -
11 PsiBlast_PDB 84.2237%-171 - C10 -3WGG - ? -
57 HHSearch 84.1837%-175 - C10 -3WG9 - ? -
29 PsiBlast_CBE 84.1437%-168 - C10 -3WGI - ? -
28 PsiBlast_CBE 84.0737%-166 - C10 -3WGI - ? -
56 HHSearch 83.8357% -77 - C10 -2VT3 5.7 REX_BACSU
13 PsiBlast_PDB 83.8337%-167 - C10 -3WGI - ? -