@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Q3Y2E2: (2018-01-30 )
MNKERLKQDFYEAVNEEWQKTAKIPADKPATGGFQDLVDGIDQLLMGETDDLLAHPEKVSSEKMKHFLAYYQLANDYDRRNELHAQPLQPIIEKVESLQSFDELNKQFPEWLLDTLPLPFNLDVDADMKNAQTNAFFAYPPSLFLPDKTYYASDHPNGAQLIGVFFDMAVQLLELAGKEKSQAEAITEQAVQFDKLIAPHVKSAEENADYSKMYNPQSFDTFIKYTDKLDLKKLVTGLIGTTPDKVIVTDPVYFDHLNDILTEAHFPLFKSWMIIKTVRSLSGYLSEEFRQVSGIYSRVLSGTDEAMPQKKAAYYLASGQFDQVVGDYYGKKYFGEAAKKDVEQMVKKMIAVYKKRLEENDWLGDATKEKAVIKLNNLGIQVGYPDKIPALFDQFKTVPADQGGTLLSNTLVFSKLTLKDRFSKWNKPVDRSEWEMSADTVNAYYHPFRNVIVFPAAILQAPFYSLEQSSSANYGGIGAVIAHEISHAFDNNGALFDEYGNLNNWWTEEDLTQFQNKAQAMIEEFDGLPFADGKVNGKLTVSENIADAGGLSCALEAAKTESDLSIEEFFVNWATIWRTKAKKEYQQLLLQIDVHAPAKLRANVQPKNLDEFYETFGITEQDAMYLAPEKRVRIW

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

RDF_A_14(4CTH)
NEP_HUMAN
[Raw transfer]




I20_A_6(2QPJ)
NEP_HUMAN
[Raw transfer]




RDF_A_6(1DMT)
NEP_HUMAN
[Raw transfer]




BIR_A_6(1R1H)
NEP_HUMAN
[Raw transfer]




OIR_A_6(1R1J)
NEP_HUMAN
[Raw transfer]




TI1_A_6(1R1I)
NEP_HUMAN
[Raw transfer]




GOL_A_6(4CTH)
NEP_HUMAN
[Raw transfer]




HA0_A_3(2YB9)
NEP_HUMAN
[Raw transfer]




GOL_A_7(1DMT)
NEP_HUMAN
[Raw transfer]




CIT_A_3(4IUW)
?
[Raw transfer]




CIT_A_3(4IUW)
?
[Raw transfer]




CIT_A_3(4IUW)
?
[Raw transfer]




STS_A_7(1Y8J)
NEP_HUMAN
[Raw transfer]




1 PsiBlast_PDB 81.8437% -73 - C7 -4IUW 3.0 ?
32 Fugue 81.3537% -73 - C7 -4IUW 3.0 ?
21 HHSearch 79.1838% 4 - C7 -4IUW 3.0 ?
22 HHSearch 73.6929% 13 - C7 -3ZUK - ? -
23 HHSearch 71.7626% 35 - C7 -1R1H - NEP_HUMAN -
5 PsiBlast_PDB 71.1525% 25 - C7 -1R1H 7.1 NEP_HUMAN
31 Fugue 71.1326% 41 * C7 *1DMT - NEP_HUMAN -
8 PsiBlast_PDB 70.7125% 24 - C7 -1Y8J 5.2 NEP_HUMAN
9 PsiBlast_PDB 70.6325% 23 - C7 -2QPJ 5.7 NEP_HUMAN
11 PsiBlast_PDB 70.6125% 27 - C7 -5JMY - NEP_HUMAN -
2 PsiBlast_PDB 70.5229% 30 - C7 -3ZUK - ? -
4 PsiBlast_PDB 70.3825% 28 - C7 -1DMT 6.5 NEP_HUMAN
10 PsiBlast_PDB 70.3025% 26 - C7 -2YB9 5.2 NEP_HUMAN
7 PsiBlast_PDB 70.2325% 26 - C7 -1R1J 5.9 NEP_HUMAN
12 PsiBlast_PDB 70.0525% 28 - C7 -4CTH 7.3 NEP_HUMAN
6 PsiBlast_PDB 69.8925% 23 - C7 -1R1I 4.6 NEP_HUMAN
24 HHSearch 68.7825% 31 - C7 -3DWB - ECE1_HUMAN -
14 PsiBlast_PDB 68.3826% 44 - C7 -4ZR5 - NEP_RABIT -
13 PsiBlast_PDB 68.1826% 45 - C7 -4XBH - NEP_RABIT -
3 PsiBlast_PDB 67.5525% 44 - C7 -3DWB - ECE1_HUMAN -