@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : HDA11_HUMAN: (2017-06-15 )
MLHTTQLYQHVPETRWPIVYSPRYNITFMGLEKLHPFDAGKWGKVINFLKEEKLLSDSMLVEAREASEEDLLVVHTRRYLNELKWSFAVATITEIPPVIFLPNFLVQRKVLRPLRTQTGGTIMAGKLAVERGWAINVGGGFHHCSSDRGGGFCAYADITLAIKFLFERVEGISRATIIDLDAHQGNGHERDFMDDKRVYIMDVYNRHIYPGDRFAKQAIRRKVELEWGTEDDEYLDKVERNIKKSLQEHLPDVVVYNAGTDILEGDRLGGLSISPAGIVKRDELVFRMVRGRRVPILMVTSGGYQKRTARIIADSILNLFGLGLIGPESPSVSAQNSDTPLLPPAVP

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GOL_B_15(4A69)
HDAC3_HUMAN
[Raw transfer]




XCH_A_6(5BWZ)
HDAC8_HUMAN
[Raw transfer]




SHH_A_6(4QA2)
HDAC8_HUMAN
[Raw transfer]




SHH_A_3(1T69)
HDAC8_HUMAN
[Raw transfer]




E1Z_A_2(5G0H)
?
[Raw transfer]




B3N_A_6(3MZ4)
HDAC8_HUMAN
[Raw transfer]




TSN_A_10(5G0G)
?
[Raw transfer]




EDO_A_4(5JI5)
?
[Raw transfer]




B3N_B_11(3EZP)
HDAC8_HUMAN
[Raw transfer]




78 Fugue 70.6226% -39 - C5 -4QA5 - HDAC8_HUMAN -
52 HHSearch 68.1723% -39 - C5 -5DC8 - HDAC8_HUMAN -
1 PsiBlast_PDB 67.0126% 13 - C5 -5G0J - ? -
2 PsiBlast_PDB 66.3726% 10 - C5 -5G0I - ? -
3 PsiBlast_PDB 66.3226% 11 - C5 -5EEF - ? -
4 PsiBlast_PDB 66.2526% 8 - C5 -5G0G 5.1 ?
51 HHSearch 66.0523% -41 - C5 -5G0G - ? -
14 PsiBlast_PDB 66.0025% -6 - C5 -4QA2 3.7 HDAC8_HUMAN
77 Fugue 65.9823% -35 - C5 -4BZ7 - ? -
13 PsiBlast_PDB 65.7326% -13 - C5 -3EZP 2.1 HDAC8_HUMAN
58 HHSearch 65.5823% -45 - C5 -4BZ7 - ? -
18 PsiBlast_PDB 65.2225% -8 - C5 -1T64 - HDAC8_HUMAN -
79 Fugue 65.2026% -5 - C5 -5G0J - ? -
16 PsiBlast_PDB 65.1925% -7 - C5 -4QA1 - HDAC8_HUMAN -
20 PsiBlast_PDB 65.0725% -12 - C5 -1T69 3.8 HDAC8_HUMAN
55 HHSearch 64.9223% -37 - C5 -4A69 Error HDAC3_HUMAN
54 HHSearch 64.6824% -33 - C5 -4LY1 - HDAC2_HUMAN -
64 HHSearch 64.6222% -48 - C5 -5EDU - HDAC6_HUMAN (first) -
12 PsiBlast_PDB 64.4525% -11 - C5 -3EW8 - HDAC8_HUMAN -
9 PsiBlast_PDB 64.3025% -12 - C5 -3MZ4 4.2 HDAC8_HUMAN