@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : HDAC4_HUMAN: (2017-06-15 )
MSSQSHPDGLSGRDQPVELLNPARVNHMPSTVDVATALPLQVAPSAVPMDLRLDHQFSLPVAEPALREQQLQQELLALKQKQQIQRQILIAEFQRQHEQLSRQHEAQLHEHIKQQQEMLAMKHQQELLEHQRKLERHRQEQELEKQHREQKLQQLKNKEKGKESAVASTEVKMKLQEFVLNKKKALAHRNLNHCISSDPRYWYGKTQHSSLDQSSPPQSGVSTSYNHPVLGMYDAKDDFPLRKTASEPNLKLRSRLKQKVAERRSSPLLRRKDGPVVTALKKRPLDVTDSACSSAPGSGPSSPNNSSGSVSAENGIAPAVPSIPAETSLAHRLVAREGSAAPLPLYTSPSLPNITLGLPATGPSAGTAGQQDAERLTLPALQQRLSLFPGTHLTPYLSTSPLERDGGAAHSPLLQHMVLLEQPPAQAPLVTGLGALPLHAQSLVGADRVSPSIHKLRQHRPLGRTQSAPLPQNAQALQHLVIQQQHQQFLEKHKQQFQQQQLQMNKIIPKPSEPARQPESHPEETEEELREHQALLDEPYLDRLPGQKEAHAQAGVQVKQEPIESDEEEAEPPREVEPGQRQPSEQELLFRQQALLLEQQRIHQLRNYQASMEAAGIPVSFGGHRPLSRAQSSPASATFPVSVQEPPTKPRFTTGLVYDTLMLKHQCTCGSSSSHPEHAGRIQSIWSRLQETGLRGKCECIRGRKATLEELQTVHSEAHTLLYGTNPLNRQKLDSKKLLGSLASVFVRLPCGGVGVDSDTIWNEVHSAGAARLAVGCVVELVFKVATGELKNGFAVVRPPGHHAEESTPMGFCYFNSVAVAAKLLQQRLSVSKILIVDWDVHHGNGTQQAFYSDPSVLYMSLHRYDDGNFFPGSGAPDEVGTGPGVGFNVNMAFTGGLDPPMGDAEYLAAFRTVVMPIASEFAPDVVLVSSGFDAVEGHPTPLGGYNLSARCFGYLTKQLMGLAGGRIVLALEGGHDLTAICDASEACVSALLGNELDPLPEKVLQQRPNANAVRSMEKVMEIHSKYWRCLQRTTSTAGRSLIEAQTCENEEAETVTAMASLSVGVKPAEKRPDEEPMEEEPPL

Atome Classification :

(61 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

9F4_B_7(4CBT)
HDAC4_HUMAN
[Raw transfer]




9F4_C_10(4CBT)

[Raw transfer]




OTF_B_7(5A2S)

[Raw transfer]




OTF_A_3(5A2S)
HDAC4_HUMAN
[Raw transfer]




TFG_B_12(2VQO)

[Raw transfer]




TFG_B_12(2VQQ)

[Raw transfer]




TFG_A_8(2VQJ)

[Raw transfer]




TSN_B_17(3C10)
HDAC7_HUMAN
[Raw transfer]




TFG_A_7(2VQQ)
HDAC4_HUMAN
[Raw transfer]




TSN_A_4(5EEF)
?
[Raw transfer]




TSN_A_16(3C10)
HDAC7_HUMAN
[Raw transfer]




N4R_A_10(5G0J)
?
[Raw transfer]




TSN_A_5(5EEK)
?
[Raw transfer]




LBH_B_11(5EF8)
?
[Raw transfer]




SHH_C_18(3C0Z)

[Raw transfer]




E1Z_A_2(5G0H)
?
[Raw transfer]




E1Z_A_2(5G0H)
?
[Raw transfer]




TFG_A_7(2VQO)
HDAC4_HUMAN
[Raw transfer]




TSN_C_18(3C10)

[Raw transfer]




FMT_B_7(5EEM)
?
[Raw transfer]




FKS_D_6(5EFH)
?
[Raw transfer]




HA3_A_6(2VQV)
HDAC4_HUMAN
[Raw transfer]




N4R_A_10(5G0J)
?
[Raw transfer]




5OK_D_5(5EFB)
?
[Raw transfer]




NU7_A_8(3ZNS)
HDAC7_HUMAN
[Raw transfer]




TSN_A_10(5G0G)
?
[Raw transfer]




TSN_A_10(5G0G)
?
[Raw transfer]




5OG_A_10(5EEN)
?
[Raw transfer]




NU9_A_8(3ZNR)
HDAC7_HUMAN
[Raw transfer]




5OG_B_6(5EEN)
?
[Raw transfer]




TSN_B_10(5EEF)
?
[Raw transfer]




6XA_A_5(4ZUQ)
APHA_MYCRA
[Raw transfer]




LBH_A_6(5EF8)
?
[Raw transfer]




NU7_B_13(3ZNS)
HDAC7_HUMAN
[Raw transfer]




5XA_A_7(4ZUP)
APHA_MYCRA
[Raw transfer]




5OJ_B_10(5EF7)
?
[Raw transfer]




FKS_A_13(5EFH)
?
[Raw transfer]




6XA_B_12(4ZUQ)
APHA_MYCRA
[Raw transfer]




SHH_B_17(3C0Z)
HDAC7_HUMAN
[Raw transfer]




HA3_B_13(2VQV)

[Raw transfer]




5OJ_A_6(5EF7)
?
[Raw transfer]




NU7_C_18(3ZNS)

[Raw transfer]




HA3_A_4(2VQM)

[Raw transfer]




SHH_A_16(3C0Z)
HDAC7_HUMAN
[Raw transfer]




XS6_A_6(4ZUO)
APHA_MYCRA
[Raw transfer]




5XA_B_16(4ZUP)
APHA_MYCRA
[Raw transfer]




FKS_B_13(4ZUM)
APHA_MYCRA
[Raw transfer]




FKS_A_6(4ZUM)
APHA_MYCRA
[Raw transfer]




XS6_B_12(4ZUO)
APHA_MYCRA
[Raw transfer]




SS9_A_3(4ZUN)
APHA_MYCRA
[Raw transfer]




EDO_A_4(5JI5)
?
[Raw transfer]




EDO_A_4(5JI5)
?
[Raw transfer]




SS9_B_13(4ZUN)
APHA_MYCRA
[Raw transfer]




MCM_F_10(5EFN)
?
[Raw transfer]




MCM_A_10(5EFK)
?
[Raw transfer]




MCM_E_15(5EFN)
?
[Raw transfer]




1 PsiBlast_PDB 84.62100%-111 - C4 -2VQJ 3.8
2 PsiBlast_PDB 83.45100%-114 - C4 -2VQM 3.3
29 PsiBlast_CBE 83.0399%-115 - C4 -4CBY - HDAC4_HUMAN
6 PsiBlast_PDB 82.2999%-115 - C4 -4CBY - HDAC4_HUMAN
27 PsiBlast_CBE 81.9899%-119 - C4 -4CBY -
28 PsiBlast_CBE 81.5299%-117 - C4 -4CBY - HDAC4_HUMAN
26 PsiBlast_CBE 81.3799%-115 - C4 -5A2S 7.4
3 PsiBlast_PDB 80.9899%-107 - C4 -2VQQ 4.5 HDAC4_HUMAN
7 PsiBlast_PDB 80.7899%-112 - C4 -5A2S 7.3 HDAC4_HUMAN
4 PsiBlast_PDB 80.7399%-111 - C4 -2VQO 4.4 HDAC4_HUMAN
23 PsiBlast_CBE 80.6999%-111 - C4 -2VQO 4.8
21 PsiBlast_CBE 80.4499%-109 - C4 -2VQQ 4.5
22 PsiBlast_CBE 79.8899%-114 - C4 -2VQV 4.0
5 PsiBlast_PDB 78.9899%-113 - C4 -2VQV 4.2 HDAC4_HUMAN
25 PsiBlast_CBE 78.19100%-110 - C4 -4CBT 7.5 HDAC4_HUMAN
24 PsiBlast_CBE 76.80100%-114 - C4 -4CBT 7.6
31 PsiBlast_CBE 76.7671%-112 - C4 -3ZNS 7.6 HDAC7_HUMAN
30 PsiBlast_CBE 74.6371%-115 - C4 -3ZNS 8.2
32 PsiBlast_CBE 74.3071%-112 - C4 -3ZNR -
36 PsiBlast_CBE 73.9171%-111 - C4 -3C0Z 3.0
34 PsiBlast_CBE 73.3671%-114 - C4 -3C10 5.6
10 PsiBlast_PDB 71.0671% -10 - C4 -3C10 5.7 HDAC7_HUMAN
9 PsiBlast_PDB 69.3771% -10 - C4 -3C0Z 3.2 HDAC7_HUMAN
11 PsiBlast_PDB 68.4071% 3 - C4 -3ZNR 8.1 HDAC7_HUMAN
12 PsiBlast_PDB 68.2571% 1 - C4 -3ZNS 8.5 HDAC7_HUMAN
37 PsiBlast_CBE 67.4371% -1 - C4 -3C0Z 3.1 HDAC7_HUMAN
35 PsiBlast_CBE 66.7771% -3 - C4 -3C10 5.6 HDAC7_HUMAN
153 HHSearch 63.9140% -74 - C4 -5G0G 5.5 ?
14 PsiBlast_PDB 62.4541% -57 - C4 -5G0J 6.2 ?
20 PsiBlast_PDB 61.9342% -61 - C4 -5EF7 4.1 ?
47 PsiBlast_CBE 61.7742% -60 - C4 -5EF8 7.5 ?
48 PsiBlast_CBE 61.5242% -61 - C4 -5EF8 7.1 ?
18 PsiBlast_PDB 61.4242% -62 - C4 -5EEM 3.5 ?
152 HHSearch 61.1145% -51 - C4 -5G0H 5.5 ?
55 PsiBlast_CBE 61.0742% -61 - C4 -5EFN 2.9 ?
17 PsiBlast_PDB 61.0342% -61 - C4 -5EEK 5.6 ?
49 PsiBlast_CBE 61.0242% -61 - C4 -5EF7 4.2 ?
43 PsiBlast_CBE 60.9842% -61 - C4 -5EFH 4.4 ?
19 PsiBlast_PDB 60.8742% -63 - C4 -5EEN 5.7 ?
53 PsiBlast_CBE 60.7642% -58 - C4 -5EFK 3.6 ?
50 PsiBlast_CBE 60.7242% -59 - C4 -5EEN 5.8 ?
54 PsiBlast_CBE 60.6142% -62 - C4 -5EFN 3.6 ?
42 PsiBlast_CBE 60.5142% -59 - C4 -5EFH 4.1 ?
13 PsiBlast_PDB 60.4841% -61 - C4 -5G0H 5.5 ?
46 PsiBlast_CBE 60.2742% -59 - C4 -5EFB 4.5 ?
58 PsiBlast_CBE 59.1438% -45 - C4 -5EEF 5.7 ?
56 PsiBlast_CBE 58.2138% -43 * C4 *5G0G 5.7 ?
57 PsiBlast_CBE 58.0738% -44 - C4 -5EEF 5.2 ?
171 Fugue 57.8033% -7 - C4 -5G0J 6.2 ?
161 HHSearch 51.8534%-111 - C4 -5JI5 2.9 ?
79 PsiBlast_CBE 43.0031% -51 - C4 -5JI5 2.9 ?
92 PsiBlast_CBE 35.7933% -47 - C4 -4ZUP 3.2 APHA_MYCRA
89 PsiBlast_CBE 35.7833% -47 - C4 -4ZUQ 3.3 APHA_MYCRA
95 PsiBlast_CBE 35.6133% -46 - C4 -4ZUN 2.5 APHA_MYCRA
91 PsiBlast_CBE 35.5033% -47 - C4 -4ZUP 2.5 APHA_MYCRA
96 PsiBlast_CBE 35.4833% -45 - C4 -4ZUN 2.6 APHA_MYCRA
97 PsiBlast_CBE 35.3333% -47 - C4 -4ZUM 3.9 APHA_MYCRA
93 PsiBlast_CBE 35.2433% -46 - C4 -4ZUO 3.3 APHA_MYCRA
94 PsiBlast_CBE 35.1533% -46 - C4 -4ZUO 3.3 APHA_MYCRA
98 PsiBlast_CBE 35.1133% -47 - C4 -4ZUM 3.7 APHA_MYCRA
90 PsiBlast_CBE 33.6933% -47 - C4 -4ZUQ 2.6 APHA_MYCRA