@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : HDAC6_HUMAN: (2017-06-15 )
MTSTGQDSTTTRQRRSRQNPQSPPQDSSVTSKRNIKKGAVPRSIPNLAEVKKKGKMKKLGQAMEEDLIVGLQGMDLNLEAEALAGTGLVLDEQLNEFHCLWDDSFPEGPERLHAIKEQLIQEGLLDRCVSFQARFAEKEELMLVHSLEYIDLMETTQYMNEGELRVLADTYDSVYLHPNSYSCACLASGSVLRLVDAVLGAEIRNGMAIIRPPGHHAQHSLMDGYCMFNHVAVAARYAQQKHRIRRVLIVDWDVHHGQGTQFTFDQDPSVLYFSIHRYEQGRFWPHLKASNWSTTGFGQGQGYTINVPWNQVGMRDADYIAAFLHVLLPVALEFQPQLVLVAAGFDALQGDPKGEMAATPAGFAQLTHLLMGLAGGKLILSLEGGYNLRALAEGVSASLHTLLGDPCPMLESPGAPCRSAQASVSCALEALEPFWEVLVRSTETVERDNMEEDNVEESEEEGPWEPPVLPILTWPVLQSRTGLVYDQNMMNHCNLWDSHHPEVPQRILRIMCRLEELGLAGRCLTLTPRPATEAELLTCHSAEYVGHLRATEKMKTRELHRESSNFDSIYICPSTFACAQLATGAACRLVEAVLSGEVLNGAAVVRPPGHHAEQDAACGFCFFNSVAVAARHAQTISGHALRILIVDWDVHHGNGTQHMFEDDPSVLYVSLHRYDHGTFFPMGDEGASSQIGRAAGTGFTVNVAWNGPRMGDADYLAAWHRLVLPIAYEFNPELVLVSAGFDAARGDPLGGCQVSPEGYAHLTHLLMGLASGRIILILEGGYNLTSISESMAACTRSLLGDPPPLLTLPRPPLSGALASITETIQVHRRYWRSLRVMKVEDREGPSSSKLVTKKAPQPAKPRLAERMTTREKKVLEAGMGKVTSASFGEESTPGQTNSETAVVALTQDQPSEAATGGATLAQTISEAAIGGAMLGQTTSEEAVGGATPDQTTSEETVGGAILDQTTSEDAVGGATLGQTTSEEAVGGATLAQTTSEAAMEGATLDQTTSEEAPGGTELIQTPLASSTDHQTPPTSPVQGTTPQISPSTLIGSLRTLELGSESQGASESQAPGEENLLGEAAGGQDMADSMLMQGSRGLTDQAIFYAVTPLPWCPHLVAVCPIPAAGLDVTQPCGDCGTIQENWVCLSCYQVYCGRYINGHMLQHHGNSGHPLVLSYIDLSAWCYYCQAYVHHQALLDVKNIAHQNKFGEDMPHPH

Atome Classification :

(51 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

TSN_A_5(5EEK)
?
[Raw transfer]




E1Z_A_2(5G0H)
?
[Raw transfer]




E1Z_A_2(5G0H)
?
[Raw transfer]




N4R_A_10(5G0J)
?
[Raw transfer]




LBH_B_11(5EF8)
?
[Raw transfer]




5OG_A_10(5EEN)
?
[Raw transfer]




5OG_B_6(5EEN)
?
[Raw transfer]




N4R_A_10(5G0J)
?
[Raw transfer]




5OK_D_5(5EFB)
?
[Raw transfer]




TSN_A_10(5G0G)
?
[Raw transfer]




FMT_B_7(5EEM)
?
[Raw transfer]




LBH_A_6(5EF8)
?
[Raw transfer]




5OJ_B_10(5EF7)
?
[Raw transfer]




5OJ_A_6(5EF7)
?
[Raw transfer]




SHH_C_18(3C0Z)

[Raw transfer]




HA3_A_6(2VQV)
HDAC4_HUMAN
[Raw transfer]




FKS_D_6(5EFH)
?
[Raw transfer]




TSN_B_17(3C10)
HDAC7_HUMAN
[Raw transfer]




TSN_C_18(3C10)

[Raw transfer]




SHH_B_17(3C0Z)
HDAC7_HUMAN
[Raw transfer]




9F4_B_7(4CBT)
HDAC4_HUMAN
[Raw transfer]




FKS_A_13(5EFH)
?
[Raw transfer]




TSN_A_16(3C10)
HDAC7_HUMAN
[Raw transfer]




TFG_B_12(2VQQ)

[Raw transfer]




9F4_C_10(4CBT)

[Raw transfer]




HA3_B_13(2VQV)

[Raw transfer]




OTF_A_3(5A2S)
HDAC4_HUMAN
[Raw transfer]




OTF_B_7(5A2S)

[Raw transfer]




TFG_B_12(2VQO)

[Raw transfer]




TFG_A_8(2VQJ)

[Raw transfer]




TFG_A_7(2VQQ)
HDAC4_HUMAN
[Raw transfer]




SHH_A_16(3C0Z)
HDAC7_HUMAN
[Raw transfer]




TFG_A_7(2VQO)
HDAC4_HUMAN
[Raw transfer]




HA3_A_4(2VQM)

[Raw transfer]




NU9_A_8(3ZNR)
HDAC7_HUMAN
[Raw transfer]




NU7_A_8(3ZNS)
HDAC7_HUMAN
[Raw transfer]




NU7_B_13(3ZNS)
HDAC7_HUMAN
[Raw transfer]




NU7_C_18(3ZNS)

[Raw transfer]




EDO_A_4(5JI5)
?
[Raw transfer]




EDO_A_4(5JI5)
?
[Raw transfer]




MCM_F_10(5EFN)
?
[Raw transfer]




MCM_E_15(5EFN)
?
[Raw transfer]




MCM_A_10(5EFK)
?
[Raw transfer]




121 Fugue 84.5457%-107 - C3 -5G0J 6.2 ?
3 PsiBlast_PDB 83.9357%-110 - C3 -5G0J 6.2 ?
1 PsiBlast_PDB 83.3456%-115 - C3 -5G0I - ?
21 PsiBlast_CBE 83.2956%-114 - C3 -5G0I - ?
4 PsiBlast_PDB 74.18100%-127 - C3 -5EDU - HDAC6_HUMAN (first)
22 PsiBlast_CBE 73.84100%-132 - C3 -5EDU - HDAC6_HUMAN (first)
108 HHSearch 72.6698%-126 - C3 -5EDU - HDAC6_HUMAN (first) -
2 PsiBlast_PDB 63.6857%-123 - C3 -5G0H 5.8 ?
97 HHSearch 63.6557%-122 - C3 -5G0H 5.8 ?
13 PsiBlast_PDB 63.5558%-128 - C3 -5EFB 4.6 ?
17 PsiBlast_PDB 63.1758%-124 - C3 -5EFK 3.6 ?
29 PsiBlast_CBE 63.0958%-126 - C3 -5EEM - ?
18 PsiBlast_PDB 62.8558%-123 - C3 -5EFN 3.7 ?
16 PsiBlast_PDB 62.8458%-122 - C3 -5EFJ - ?
26 PsiBlast_CBE 62.8158%-126 - C3 -5EF8 6.6 ?
8 PsiBlast_PDB 62.7758%-126 - C3 -5EEK 5.9 ?
31 PsiBlast_CBE 62.7258%-123 - C3 -5EFN 3.8 ?
10 PsiBlast_PDB 62.6258%-127 - C3 -5EEN 5.8 ?
14 PsiBlast_PDB 62.5958%-126 - C3 -5EFG - ?
27 PsiBlast_CBE 62.5158%-126 - C3 -5EF7 4.3 ?
24 PsiBlast_CBE 62.4458%-125 - C3 -5EFH 4.0 ?
9 PsiBlast_PDB 62.2758%-127 - C3 -5EEM 3.8 ?
11 PsiBlast_PDB 62.1658%-124 - C3 -5EF7 4.3 ?
15 PsiBlast_PDB 62.1158%-123 - C3 -5EFH 3.8 ?
12 PsiBlast_PDB 61.3858%-122 - C3 -5EF8 6.8 ?
28 PsiBlast_CBE 61.3258%-122 - C3 -5EEN 5.4 ?
105 HHSearch 60.5348%-125 - C3 -5G0G 5.8 ?
20 PsiBlast_PDB 47.3746% -60 - C3 -2VQV 4.1 HDAC4_HUMAN
33 PsiBlast_CBE 47.3646% -38 - C3 -2VQO 4.7
54 PsiBlast_CBE 47.1345% -31 - C3 -3C10 5.8 HDAC7_HUMAN
34 PsiBlast_CBE 46.9046% -39 - C3 -2VQQ 4.5
32 PsiBlast_CBE 46.8646% -61 - C3 -2VQV 4.1
36 PsiBlast_CBE 46.7046% -38 - C3 -2VQM 3.3
57 PsiBlast_CBE 46.3145% -30 - C3 -3C0Z 3.2 HDAC7_HUMAN
39 PsiBlast_CBE 46.2546% -17 - C3 -4CBT 7.5 HDAC4_HUMAN
47 PsiBlast_CBE 46.1645% -32 - C3 -3ZNS 7.9 HDAC7_HUMAN
41 PsiBlast_CBE 46.0046% -34 - C3 -5A2S 7.3 HDAC4_HUMAN
40 PsiBlast_CBE 45.6746% -34 - C3 -5A2S 7.3
48 PsiBlast_CBE 45.6445% -23 - C3 -3ZNS 8.7 HDAC7_HUMAN
19 PsiBlast_PDB 45.0646% -14 - C3 -2VQO 4.3 HDAC4_HUMAN
56 PsiBlast_CBE 45.0045% -22 - C3 -3C0Z 3.3 HDAC7_HUMAN
51 PsiBlast_CBE 44.9245% -22 - C3 -3ZNR 8.2 HDAC7_HUMAN
119 HHSearch 44.7536%-116 * C3 *5JI5 3.0 ?
53 PsiBlast_CBE 44.7245% -22 - C3 -3C10 5.6 HDAC7_HUMAN
37 PsiBlast_CBE 44.4446% -30 - C3 -2VQJ 3.8
35 PsiBlast_CBE 44.3246% -13 - C3 -2VQQ 4.8 HDAC4_HUMAN
46 PsiBlast_CBE 43.8645% -5 - C3 -3ZNS 8.3
38 PsiBlast_CBE 43.4746% -26 - C3 -4CBT 7.6
52 PsiBlast_CBE 43.3545% -4 - C3 -3C10 5.6
55 PsiBlast_CBE 42.2445% -7 - C3 -3C0Z 3.0
92 PsiBlast_CBE 31.2238% -0 - C3 -5JI5 3.0 ?